View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_240 (Length: 261)
Name: NF8260A_low_240
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_240 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 41550978 - 41551207
Alignment:
| Q |
20 |
aaatccaacggtgttgatgcgtggaacgaagtgcagaagaattttgataagcttgcgaaagacggttttcttcatcgcgttgatttcggtcaatgcatag |
119 |
Q |
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| T |
41550978 |
aaatccaacggtgttgatgcgtggaacgaagtgcagaagaattttgataagcttgcgaaagacggttttcttcatcgcgttgatttcggtcaatgcatag |
41551077 |
T |
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| Q |
120 |
gtcaatttctttcttcaaatctcaatttatcataatcttgcaatgtttgttcaatgcatcttattcttannnnnnnnnnnngagtttctttaaatgcatt |
219 |
Q |
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| T |
41551078 |
gtcaatttctttcttcaaatctcaatttatcataatcttgcaatgtttgttcaatgcatcttattcttattttttatttttgagtttctttaaatgcatt |
41551177 |
T |
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| Q |
220 |
ttagtttggtgaatttatggcctaaatatt |
249 |
Q |
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| T |
41551178 |
ttagtttggtgaatttatggcctaaatatt |
41551207 |
T |
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