View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_246 (Length: 260)

Name: NF8260A_low_246
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_246
NF8260A_low_246
[»] chr2 (8 HSPs)
chr2 (20-260)||(37210117-37210356)
chr2 (122-259)||(29927697-29927839)
chr2 (157-256)||(35494924-35495030)
chr2 (197-258)||(12892835-12892896)
chr2 (122-187)||(38342370-38342433)
chr2 (155-255)||(38283909-38284010)
chr2 (122-221)||(32978970-32979075)
chr2 (187-236)||(6069170-6069219)
[»] chr6 (7 HSPs)
chr6 (122-255)||(32549448-32549587)
chr6 (121-221)||(1038296-1038402)
chr6 (174-231)||(33900158-33900215)
chr6 (187-255)||(11004259-11004327)
chr6 (187-258)||(214777-214848)
chr6 (219-260)||(1054991-1055032)
chr6 (187-255)||(4332978-4333046)
[»] chr7 (3 HSPs)
chr7 (122-259)||(24972898-24973041)
chr7 (121-255)||(33487227-33487367)
chr7 (203-255)||(41639744-41639796)
[»] scaffold0067 (1 HSPs)
scaffold0067 (153-259)||(15287-15397)
[»] chr3 (5 HSPs)
chr3 (118-255)||(40361961-40362096)
chr3 (123-259)||(1699972-1700113)
chr3 (186-232)||(39028174-39028220)
chr3 (187-239)||(29570389-29570441)
chr3 (187-223)||(31984431-31984467)
[»] chr4 (5 HSPs)
chr4 (144-255)||(47533727-47533845)
chr4 (186-255)||(19401742-19401811)
chr4 (118-184)||(24894658-24894723)
chr4 (187-259)||(53711723-53711795)
chr4 (187-259)||(55520978-55521050)
[»] chr1 (7 HSPs)
chr1 (187-257)||(39939236-39939306)
chr1 (187-255)||(44686300-44686368)
chr1 (186-257)||(45962249-45962320)
chr1 (201-259)||(28190525-28190583)
chr1 (187-255)||(37543816-37543883)
chr1 (187-248)||(28651004-28651065)
chr1 (211-255)||(28190587-28190631)
[»] chr8 (5 HSPs)
chr8 (187-260)||(32703262-32703335)
chr8 (186-260)||(37165161-37165235)
chr8 (187-260)||(9261241-9261314)
chr8 (187-255)||(37973412-37973480)
chr8 (197-259)||(34646253-34646315)
[»] chr5 (2 HSPs)
chr5 (120-187)||(39043523-39043589)
chr5 (126-182)||(40767212-40767267)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 37210117 - 37210356
Alignment:
Q  20 gtaatgggaactgatacatagactaatcaccgagaaattagtctttgaaagaccaaaacttcattggcaaattgtgttggcagtaatgtggaatcaacat 119  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  37210117 gtaatgggaacttatacatagactaattaccgagaaattagtctttgaaagaccaaaacttcattggcaaattctgttggcagtaatgtggaatcaacat 37210216  T
Q  120 ttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttcattaactgccgatgaattttaaccggcggtagtt 219  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||    
T  37210217 ttgaaaattgatgttcccacatc-aaaggttgctaggaaacaccacgaaattaccaatataacttcattaactgccgatcaattttaaccgaccgtagtt 37210315  T
Q  220 aactaccaatgaaaattggggttaaatttgtcatttcatga 260  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  37210316 cactaccaatgaaaattggggttaaatttgtcatttcatga 37210356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 29927697 - 29927839
Alignment:
Q  122 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttca-------ttaactgccgatgaattttaaccggcgg 214  Q
    |||| ||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||       |||||||| |||| |||||||||| ||     
T  29927697 gaaatttgttgttcccacatcaaa-ggttgataggaaacaccacgaaattaccaatataacctcatcggcagttaactgctgatggattttaaccgacga 29927795  T
Q  215 tagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    ||||||||| || |||||| |||||||||||||| ||||||||||    
T  29927796 tagttaact-ccgatgaaatttggggttaaatttatcatttcatg 29927839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 35495030 - 35494924
Alignment:
Q  157 aaacaccacgaaattaccaatataacttcat-------taactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttg 249  Q
    |||||||||||||||| |||||||||| |||       |||||||||||||||||||||||  |||| ||||||| | |||||| ||| | |||||||||    
T  35495030 aaacaccacgaaattatcaatataactccatcggcagttaactgccgatgaattttaaccgatggtaattaactatcgatgaaatttgagattaaatttg 35494931  T
Q  250 tcatttc 256  Q
    |||||||    
T  35494930 tcatttc 35494924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 12892896 - 12892835
Alignment:
Q  197 atgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcat 258  Q
    |||||||||||||| ||||||||||||  | | ||||||||||||||||||| |||||||||    
T  12892896 atgaattttaaccgacggtagttaactgtcgacgaaaattggggttaaatttatcatttcat 12892835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 38342433 - 38342370
Alignment:
Q  122 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttcat 187  Q
    |||||||| ||||||||| |||||  || |||| ||||||||||||||||||||||||||| ||||    
T  38342433 gaaaattgttgttcccacgtcaaa--gttgctatgaaacaccacgaaattaccaatataacctcat 38342370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 38284010 - 38283909
Alignment:
Q  155 ggaaacaccacgaaattaccaatataacttcattaactgccgatgaattttaaccggcggtagttaactacc-aatgaaaattggggttaaatttgtcat 253  Q
    ||||||||||| ||| |||||| ||||  |||| ||||  |||||||||||||||  |||||||||||| || ||  ||||||| |||||| ||||||||    
T  38284010 ggaaacaccactaaaataccaaaataatctcatcaactttcgatgaattttaaccaacggtagttaactgccgaagaaaaattgaggttaagtttgtcat 38283911  T
Q  254 tt 255  Q
    ||    
T  38283910 tt 38283909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 32978970 - 32979075
Alignment:
Q  122 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttca-------ttaactgccgatgaattttaaccggcgg 214  Q
    |||||||| ||||||||||||| | ||| ||||||||||||||| |||||| ||||||||  |||       ||||||||||||||||||||| || | |    
T  32978970 gaaaattgttgttcccacatcata-ggttgctaggaaacaccacaaaattatcaatataaactcattggtagttaactgccgatgaattttaatcgacag 32979068  T
Q  215 tagttaa 221  Q
    |||||||    
T  32979069 tagttaa 32979075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 6069219 - 6069170
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaatt 236  Q
    |||||||||||||||||||||||| ||||| |||||| || || ||||||    
T  6069219 ttaactgccgatgaattttaaccgacggtaattaactgccgataaaaatt 6069170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 32549587 - 32549448
Alignment:
Q  122 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttcat-------taactgccgatgaattttaaccggcgg 214  Q
    |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||     
T  32549587 gaaaattgatgttcccacatcaaaagtt-gctatgaaacaccacgaaattaccaatataacttcatcgacaattaactgccgatgaattttaaccgacga 32549489  T
Q  215 tagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    |||||||||||| |||||| ||||||||||| |||||||||    
T  32549488 tagttaactaccgatgaaatttggggttaaacttgtcattt 32549448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 1038296 - 1038402
Alignment:
Q  121 tgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataac---ttca----ttaactgccgatgaattttaaccggcg 213  Q
    |||||||||||||||||||||| |||||| | || ||||||| || ||||||||||||||||   ||||    |||||||||||||||||||| ||| ||    
T  1038296 tgaaaattgatgttcccacatc-aaaggttgttatgaaacacaacaaaattaccaatataactctttcagtagttaactgccgatgaattttatccgacg 1038394  T
Q  214 gtagttaa 221  Q
    ||||||||    
T  1038395 gtagttaa 1038402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 33900215 - 33900158
Alignment:
Q  174 caatataacttcattaactgccgatgaattttaaccggcggtagttaactaccaatga 231  Q
    ||||||||| ||||  || |||||||||||||||||||||| ||||||||||||||||    
T  33900215 caatataacatcatcgacagccgatgaattttaaccggcggcagttaactaccaatga 33900158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 11004259 - 11004327
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    |||||||||| || |||| |||||||||| |||||||||  ||| || ||||||||||| |||||||||    
T  11004259 ttaactgccgttggatttaaaccggcggttgttaactacggatggaatttggggttaaacttgtcattt 11004327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 214848 - 214777
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcat 258  Q
    ||||| |||| |||||||||||||  ||||| |||||||| ||| || |||  |||||||||||||||||||    
T  214848 ttaaccgccgttgaattttaaccgatggtagctaactaccgatgtaatttgaagttaaatttgtcatttcat 214777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 1055032 - 1054991
Alignment:
Q  219 taactaccaatgaaaattggggttaaatttgtcatttcatga 260  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  1055032 taactgccaataaaaattgggattaaatttgtcatttcatga 1054991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 4333046 - 4332978
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    ||||||| ||||||||||||||||    || ||||||||| ||||||||||  ||||||||||| ||||    
T  4333046 ttaactgtcgatgaattttaaccgataataattaactaccgatgaaaattgacgttaaatttgttattt 4332978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 24972898 - 24973041
Alignment:
Q  122 gaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttcat-------taactgccgatgaattttaaccggcgg 214  Q
    |||||||| ||||||||||||||| ||   |||||||||| |||||||||||||||||||| ||||       |||||||||||| ||||||||||||||    
T  24972898 gaaaattgttgttcccacatcaaaggggt-ctaggaaacatcacgaaattaccaatataacatcatcgacagttaactgccgatggattttaaccggcgg 24972996  T
Q  215 tagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    |||||||||| | ||| ||||||| ||||||||||||||||||||    
T  24972997 tagttaactatcgatggaaattggagttaaatttgtcatttcatg 24973041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 33487367 - 33487227
Alignment:
Q  121 tgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttca-------ttaactgccgatgaattttaaccggcg 213  Q
    ||||||||||||||||| ||||||| | | |||| ||||||||||||||||| |||||||||   |       ||||||||||||||||||||||||  |    
T  33487367 tgaaaattgatgttcccgcatcaaa-gattgctatgaaacaccacgaaattatcaatataaccctatgggcagttaactgccgatgaattttaaccgctg 33487269  T
Q  214 gtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
     |||||||||||| ||  || |||  ||||||||||| ||||    
T  33487268 atagttaactaccgatagaatttgaagttaaatttgttattt 33487227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 41639744 - 41639796
Alignment:
Q  203 tttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    ||||||||  |||||||||||  | ||| ||||||||||||||||||||||||    
T  41639744 tttaaccgatggtagttaactgtcgatggaaattggggttaaatttgtcattt 41639796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 259
Target Start/End: Original strand, 15287 - 15397
Alignment:
Q  153 taggaaacaccacgaaattaccaatataacttcat-------taactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaa 245  Q
    ||||||||||||||||| |||||| ||||| ||||       |||||||||| ||||||||||||| |||||||||||    ||||||||||||||||||    
T  15287 taggaaacaccacgaaaataccaaaataacctcatcgactgttaactgccgacgaattttaaccggtggtagttaactg---atgaaaattggggttaaa 15383  T
Q  246 tttgtcatttcatg 259  Q
    ||||||||||||||    
T  15384 tttgtcatttcatg 15397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 255
Target Start/End: Original strand, 40361961 - 40362096
Alignment:
Q  118 atttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataactt-ca-ttaactgccgatgaattttaaccggcggt 215  Q
    |||||||||||| |||| ||| |||||||| | ||||||||||||||| ||||||  ||   || || || ||||||| ||||| |||||||||| ||||    
T  40361961 atttgaaaattgctgtttccagatcaaaagtt-gctaggaaacaccacaaaattattaa---aagttgcagttaactgtcgatggattttaaccgacggt 40362056  T
Q  216 agttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    ||||||||| |||||||| |||||||||||||| ||||||    
T  40362057 agttaactatcaatgaaatttggggttaaatttttcattt 40362096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 1700113 - 1699972
Alignment:
Q  123 aaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttca-------ttaactgccgatgaattttaaccggcggt 215  Q
    ||||||||||||||||| ||||  ||| |||||||||||| | ||||||||||||||||  |||       ||||||| | ||| |||||||| | ||||    
T  1700113 aaaattgatgttcccacttcaa--ggttgctaggaaacactatgaaattaccaatataatctcaccggcagttaactgtcaatggattttaactgacggt 1700016  T
Q  216 agttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    |||||||  || ||| || ||| |||||||||||| ||||||||    
T  1700015 agttaacggccgatggaatttgaggttaaatttgttatttcatg 1699972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 39028174 - 39028220
Alignment:
Q  186 attaactgccgatgaattttaaccggcggtagttaactaccaatgaa 232  Q
    |||||||| |||||||||||||||||||| |||||||| || |||||    
T  39028174 attaactgtcgatgaattttaaccggcggcagttaactgccgatgaa 39028220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 29570389 - 29570441
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggg 239  Q
    |||||||| |||| |||||||||||||||||||| || || | ||||||||||    
T  29570389 ttaactgctgatggattttaaccggcggtagttagctgccgaagaaaattggg 29570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 31984467 - 31984431
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaact 223  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  31984467 ttaaccgccgatgaattttaaccggcggcagttaact 31984431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 47533727 - 47533845
Alignment:
Q  144 aaaggtcgctaggaaacaccacgaaattaccaatataacttcat-------taactgccgatgaattttaaccggcggtagttaactaccaatgaaaatt 236  Q
    |||||| | ||||||||||||| || ||||||||||||||||||       | |||||||||||||||| || ||||||||||||| ||| |||||| ||    
T  47533727 aaaggttgttaggaaacaccacaaatttaccaatataacttcatcgacagttgactgccgatgaattttgactggcggtagttaacgaccgatgaaattt 47533826  T
Q  237 ggggttaaatttgtcattt 255  Q
    | |||||||||| ||||||    
T  47533827 gaggttaaatttatcattt 47533845  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 19401742 - 19401811
Alignment:
Q  186 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    |||||||||||||  |||||||||| |||||||||||| || | ||||||||||||||||||| ||||||    
T  19401742 attaactgccgatagattttaaccgacggtagttaactgccgaagaaaattggggttaaatttatcattt 19401811  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 24894658 - 24894723
Alignment:
Q  118 atttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataactt 184  Q
    ||||||||||||||||||||||||| |||||| |  | |||||||||| ||||||||||||||||||    
T  24894658 atttgaaaattgatgttcccacatc-aaaggttgtaatgaaacaccacaaaattaccaatataactt 24894723  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 53711795 - 53711723
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    |||||||  |||||||||||||| ||| || ||||||| |||||||| ||  |||||||||||||||||||||    
T  53711795 ttaactgttgatgaattttaaccagcgataattaactaacaatgaaatttaaggttaaatttgtcatttcatg 53711723  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 55521050 - 55520978
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    ||||||||||||||||||||||  |||||| |||||||   ||| || |||||| |||| |||||||||||||    
T  55521050 ttaactgccgatgaattttaacttgcggtatttaactattgatgtaatttggggctaaacttgtcatttcatg 55520978  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 39939306 - 39939236
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttca 257  Q
    |||||||| | ||||||||||||| ||||||||||||||| ||| || || |||||||| |||||||||||    
T  39939306 ttaactgctgctgaattttaaccgacggtagttaactaccgatgtaatttagggttaaacttgtcatttca 39939236  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 44686300 - 44686368
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    |||||||||||||||||||||||||  ||| |||||| || | ||||||||| ||||||||||| ||||    
T  44686300 ttaactgccgatgaattttaaccggatgtaattaactgccgaagaaaattggagttaaatttgttattt 44686368  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 45962249 - 45962320
Alignment:
Q  186 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttca 257  Q
    ||||||||||||| |||||||||||||||| ||||||| || |||||||| |  |||||||||  |||||||    
T  45962249 attaactgccgataaattttaaccggcggtcgttaactgcccatgaaaatcgaagttaaatttaccatttca 45962320  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 28190583 - 28190525
Alignment:
Q  201 attttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    ||||||||| |||||||||||||||  |||||| ||| ||||||| |||||||||||||    
T  28190583 attttaaccagcggtagttaactactgatgaaatttgaggttaaacttgtcatttcatg 28190525  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 37543816 - 37543883
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    ||||||||||||| |||| || |||| |||||||||||||||| ||| || ||||||||||| ||||||    
T  37543816 ttaactgccgatggattt-aatcggcagtagttaactaccaataaaatttagggttaaatttttcattt 37543883  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 28651065 - 28651004
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaattt 248  Q
    ||||||||||||| |||||||||| ||||| |||| | |  |||||||||| ||||||||||    
T  28651065 ttaactgccgatggattttaaccgacggtaattaattgctgatgaaaattgaggttaaattt 28651004  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 28190587 - 28190631
Alignment:
Q  211 gcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    |||||||||||||||| |||||| ||| ||||||| |||||||||    
T  28190587 gcggtagttaactaccgatgaaatttgaggttaaacttgtcattt 28190631  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 32703262 - 32703335
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 260  Q
    ||||||||||||  |||||||||| | ||||||||||  |||| |||||||| ||||||||| |||||||||||    
T  32703262 ttaactgccgatagattttaaccgacagtagttaactgtcaataaaaattggcgttaaatttatcatttcatga 32703335  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 37165235 - 37165161
Alignment:
Q  186 attaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 260  Q
    |||||||| |||||  ||||||||||||||| |||||| || | ||||| |||| ||||||||||||||| ||||    
T  37165235 attaactgacgatgggttttaaccggcggtaattaactgccgaagaaaaatgggattaaatttgtcattttatga 37165161  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 260
Target Start/End: Complemental strand, 9261314 - 9261241
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatga 260  Q
    ||||||| | ||||||||||||||||  || |||||| || | ||||||||||||||||||| |||||| ||||    
T  9261314 ttaactgtcaatgaattttaaccggccctaattaactgccgaagaaaattggggttaaatttatcatttaatga 9261241  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 37973480 - 37973412
Alignment:
Q  187 ttaactgccgatgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcattt 255  Q
    ||||||| |||||||||||||||| ||||||| |||| |  | |||||||| |||||||||| ||||||    
T  37973480 ttaactgtcgatgaattttaaccgacggtagtcaactgctgaagaaaattgaggttaaatttatcattt 37973412  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Original strand, 34646253 - 34646315
Alignment:
Q  197 atgaattttaaccggcggtagttaactaccaatgaaaattggggttaaatttgtcatttcatg 259  Q
    |||||||| || || |||||||||||| || ||| || ||||| |||||||||||||||||||    
T  34646253 atgaatttaaatcgacggtagttaacttccgatggaatttgggattaaatttgtcatttcatg 34646315  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 39043523 - 39043589
Alignment:
Q  120 ttgaaaattgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataacttcat 187  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||  |||||||||| ||||| ||||    
T  39043523 ttgaaaattaatgttcccacatcaaaa-gttgctaggaaacaccataaaattaccaaaataacctcat 39043589  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 40767267 - 40767212
Alignment:
Q  126 attgatgttcccacatcaaaaggtcgctaggaaacaccacgaaattaccaatataac 182  Q
    |||||||||||||||||||| ||| |||| |||||||||  ||| ||||||||||||    
T  40767267 attgatgttcccacatcaaagggt-gctatgaaacaccagaaaaataccaatataac 40767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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