View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_247 (Length: 259)

Name: NF8260A_low_247
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_247
NF8260A_low_247
[»] chr1 (15 HSPs)
chr1 (2-146)||(13244107-13244251)
chr1 (151-259)||(13244450-13244558)
chr1 (145-259)||(13080788-13080902)
chr1 (148-259)||(13086262-13086373)
chr1 (150-259)||(13094554-13094663)
chr1 (143-259)||(19279089-19279205)
chr1 (144-259)||(12963797-12963912)
chr1 (77-146)||(12963575-12963644)
chr1 (150-259)||(13129983-13130092)
chr1 (72-139)||(19278827-19278894)
chr1 (150-259)||(13161676-13161785)
chr1 (151-259)||(13271741-13271849)
chr1 (2-81)||(19278730-19278809)
chr1 (150-259)||(13070104-13070213)
chr1 (150-259)||(13204614-13204723)


Alignment Details
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 13244107 - 13244251
Alignment:
Q  2 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaagatgtagatgaatctcgttatt 101  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13244107 gagaagaagggcaaggcagctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaagatgtagatgaatctcgttatt 13244206  T
Q  102 gcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 146  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13244207 gcctgctaaaagaactaatgaaggaaagattgggaaagggggaaa 13244251  T

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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 151 - 259
Target Start/End: Original strand, 13244450 - 13244558
Alignment:
Q  151 ttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 250  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13244450 ttgataagcttgtttaccttcatggagccatatgtgaaaccttgaggctatatcctcctctggcatttcagcacaagtgcgctatcaaatctgatatact 13244549  T
Q  251 acctagtgg 259  Q
    |||||||||    
T  13244550 acctagtgg 13244558  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 145 - 259
Target Start/End: Original strand, 13080788 - 13080902
Alignment:
Q  145 aagagcttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctga 244  Q
    |||||||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||| || | ||||||||||||||||||||||||||||| ||    
T  13080788 aagagcttgataagctagtttaccttcatggagccatatgtgaagccttaaggctatatccttctgtagcatttcagcacaagtgtgctatcaaatcgga 13080887  T
Q  245 tatactacctagtgg 259  Q
    || ||| ||||||||    
T  13080888 taaacttcctagtgg 13080902  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 13086373 - 13086262
Alignment:
Q  148 agcttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatat 247  Q
    ||||| |||| || || ||||||||||| || ||||||||| | || ||||| | ||||||| |  ||||||||||||||||||| |||||| |||||||    
T  13086373 agcttaataaactagtgtaccttcatggagctatatgtgaagcattgaggctttatcctcctgtaccatttcagcacaagtgtgcaatcaaagctgatat 13086274  T
Q  248 actacctagtgg 259  Q
    ||||||||||||    
T  13086273 actacctagtgg 13086262  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 13094663 - 13094554
Alignment:
Q  150 cttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 249  Q
    ||||||||||| || ||||| ||||| || |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||||| ||||||||||||||||    
T  13094663 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctgtaccttttgagcatatctgtgcaatcaaatctgatatac 13094564  T
Q  250 tacctagtgg 259  Q
    ||||||||||    
T  13094563 tacctagtgg 13094554  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 259
Target Start/End: Original strand, 19279089 - 19279205
Alignment:
Q  143 gaaagagcttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatct 242  Q
    |||||||||||||||||| ||||| |||||||| || ||||||||| |||||||||| | ||| ||| |  ||||| | |||||||||||  | || ||     
T  19279089 gaaagagcttgataagctagtttatcttcatggagctatatgtgaagccttaaggctttatccacctgtaccatttgaacacaagtgtgcagttaattcc 19279188  T
Q  243 gatatactacctagtgg 259  Q
    |||||||||||||||||    
T  19279189 gatatactacctagtgg 19279205  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 12963797 - 12963912
Alignment:
Q  144 aaagagcttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctg 243  Q
    |||| |||||||||||||||||| |||||||| || || |||||| | |||||||| | ||||||| |  ||||| | ||||||||||| || ||||| |    
T  12963797 aaagggcttgataagcttgtttatcttcatggagctatttgtgaagctttaaggctttatcctcctataccatttgaacacaagtgtgcaattaaatcag 12963896  T
Q  244 atatactacctagtgg 259  Q
    ||||| ||||||||||    
T  12963897 atatattacctagtgg 12963912  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 12963575 - 12963644
Alignment:
Q  77 gaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaagagggaaa 146  Q
    ||||| || |||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  12963575 gaagacgtggatgaatctcattcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaa 12963644  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 13130092 - 13129983
Alignment:
Q  150 cttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 249  Q
    ||||||||||| || ||||| ||||| || |||||||||||||||||||| | ||||||| |  | ||| |||| |  ||| | ||||||||||||||||    
T  13130092 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatcctcctataccttttgagcatatctgttcaatcaaatctgatatac 13129993  T
Q  250 tacctagtgg 259  Q
    ||||||||||    
T  13129992 tacctagtgg 13129983  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 19278827 - 19278894
Alignment:
Q  72 gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaagaaggattgggaaag 139  Q
    |||||||||| |  |||||||||| |||||||||| |||||||||||||||| ||| |||||||||||    
T  19278827 gaaatgaagacgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaag 19278894  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 13161785 - 13161676
Alignment:
Q  150 cttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 249  Q
    ||||||||||| || ||||| ||||| || |||||||||||||||||||| | ||| ||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13161785 cttgataagctagtatacctccatggagctatatgtgaaaccttaaggctttatccacctataccttttgagcatatctgtgcaatcaaatccgatatac 13161686  T
Q  250 tacctagtgg 259  Q
    ||||||||||    
T  13161685 tacctagtgg 13161676  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 13271849 - 13271741
Alignment:
Q  151 ttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatact 250  Q
    ||||||||||  ||||||||||||  || |||||||||||||| || || | ||||||| |  ||||| | |||||||||||  | || |||||||||||    
T  13271849 ttgataagctgatttaccttcatgcagctatatgtgaaaccttgagactttatcctcctataccatttgatcacaagtgtgcagttaattctgatatact 13271750  T
Q  251 acctagtgg 259  Q
    |||||||||    
T  13271749 acctagtgg 13271741  T

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Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 19278730 - 19278809
Alignment:
Q  2 gagaagaagggcaaggcagcaaaagaaaatcttcaccacttcttggacaaatgtataactgagtacaaaggaaatgaaga 81  Q
    ||||||||||||| || ||| ||||||||||||||| | |||||| ||||||||||| || | ||||||||  |||||||    
T  19278730 gagaagaagggcacggtagctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaaga 19278809  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 13070104 - 13070213
Alignment:
Q  150 cttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 249  Q
    |||||||| || || ||||||||||| || |||||||||||||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13070104 cttgataatctagtgtaccttcatggagctatatgtgaaaccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13070203  T
Q  250 tacctagtgg 259  Q
    ||||||||||    
T  13070204 tacctagtgg 13070213  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 13204723 - 13204614
Alignment:
Q  150 cttgataagcttgtttaccttcatggcgccatatgtgaaaccttaaggctatttcctcctctggcatttcagcacaagtgtgctatcaaatctgatatac 249  Q
    ||||||||||| || ||||||||||| || ||||||||| |||| || || | ||||||| |  | ||| |||| |  ||||| |||||||| |||||||    
T  13204723 cttgataagctagtgtaccttcatggagctatatgtgaagccttgagactttatcctcctgtaccttttgagcatatatgtgcaatcaaatccgatatac 13204624  T
Q  250 tacctagtgg 259  Q
    ||||||||||    
T  13204623 tacctagtgg 13204614  T

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