View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_249 (Length: 259)
Name: NF8260A_low_249
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_249 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 39 - 250
Target Start/End: Complemental strand, 19139337 - 19139125
Alignment:
| Q |
39 |
ctatttaatgagacaaag-aaaagtttcattaccaaattatagaaggtgcaaggagacccataagatttacgtaaaaaccactttaaagataagaactta |
137 |
Q |
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| T |
19139337 |
ctatttaatgagacaaaggaaaagtttcattaccaaattatagaaggtgcaagaagacccataaggtttacgtaaaaaccactttaaagataagaactta |
19139238 |
T |
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| Q |
138 |
ttattattcacaaatggataaacattataagtcaaatgacataaccatctcccactcaaactggttaaaaatcttatgcaacacttaaagcgagatctca |
237 |
Q |
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| T |
19139237 |
ttattattcacaaatggataaacattataagtcaaatgacataaccatctcccactcaaactggttaaaaatcttatgcaacacttaaagtgagatctca |
19139138 |
T |
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| Q |
238 |
catacaacaaaca |
250 |
Q |
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| T |
19139137 |
catacaacaaaca |
19139125 |
T |
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