View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_254 (Length: 256)
Name: NF8260A_low_254
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_254 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 36724378 - 36724252
Alignment:
| Q |
13 |
tggacatcagaccttcaatttgataatacagatctttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
112 |
Q |
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| T |
36724378 |
tggacatcagaccttcaatttgataatacagatttttctctagactctgtgaaggatgtggatgctcttagaacaagcatataagatagtagtgaattta |
36724279 |
T |
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| Q |
113 |
gatgcattatagatgcttgtagacagt |
139 |
Q |
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| T |
36724278 |
gatgcattatagatgcttgtagacagt |
36724252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 36723895 - 36723765
Alignment:
| Q |
126 |
tgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaataaagtcaggctaatgaggttgctcatgagttagctcagatagtcc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |||||| | ||||||| ||||||||||||||||||| |
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| T |
36723895 |
tgcttgtagacagttatttcatagtagatttcaaaactcttaagttgagtttaatagagtcagactaatgggattgctcacgagttagctcagatagtcc |
36723796 |
T |
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| Q |
226 |
cacataatactaactcccacacctatgatga |
256 |
Q |
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| T |
36723795 |
cacataatactagctctcacacctatgatga |
36723765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 712145 - 712314
Alignment:
| Q |
12 |
atggacatcagaccttcaatttgataatacagatctttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattt |
111 |
Q |
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| T |
712145 |
atggacatcataccttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgtgtagaagatagttgtgaattt |
712244 |
T |
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| Q |
112 |
agatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
181 |
Q |
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| T |
712245 |
ggatgtattatacttgcatgtagatagttgtttcaaaatagattttaaaactctcatgttgagtttaata |
712314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 717356 - 717577
Alignment:
| Q |
13 |
tggacatcagaccttcaatttgataatacagatctttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
112 |
Q |
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||||||||| ||||||||||||||||| |||| | ||||||||| | ||| | ||| |||||| |||||| | | || ||||| | |||||||| |
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| T |
717356 |
tggacatcacaccttcaatttgataatgtagatttagctctagactctaagaaggttgttgatgcttttagaagatgtgtaggagatagtagtgaatttg |
717455 |
T |
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| Q |
113 |
gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata-aagtcaggctaatgaggttgctcatgagtt |
211 |
Q |
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|||| ||||||| || |||||||| ||||| || |||||||||||||||||||| |||||||||||| || || ||||||| | | || | ||||| |
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| T |
717456 |
gatgtattatagttgaatgtagacaattattccaaagtagatttcaaaactctcatgttgagtttaataggagacaagctaatgggatcacttacgagtt |
717555 |
T |
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| Q |
212 |
agctcagatagtcccacataat |
233 |
Q |
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|||||| |||| |||||||||| |
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| T |
717556 |
agctcatatagccccacataat |
717577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 14541080 - 14541248
Alignment:
| Q |
13 |
tggacatcagaccttcaatttgataatacagatctttctctagactttgtgaaagatgtggatgctcttagaacaagcatataagataatggtgaattta |
112 |
Q |
| |
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||||||||| ||||||||||||||||| | || |||||||||||| | ||| |||||||||| |||||||| || |||||||| || |||||| |
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| T |
14541080 |
tggacatcataccttcaatttgataatgtatatttttctctagactcttagaagattgtggatgcttttagaacatatgtagaagataatagtaaattta |
14541179 |
T |
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| Q |
113 |
gatgcattatagatgcttgtagacagttatttcatagtagatttcaaaactctcaaattgagtttaata |
181 |
Q |
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|||| |||||||||| ||||||||| | ||||| |||| ||| ||||||||| ||||||||||||| |
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| T |
14541180 |
gatgtattatagatgtttgtagacaagtgtttcaaagtaattttaaaaactctcgtattgagtttaata |
14541248 |
T |
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