View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_26 (Length: 443)

Name: NF8260A_low_26
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_26
NF8260A_low_26
[»] chr3 (14 HSPs)
chr3 (13-437)||(5484450-5484872)
chr3 (13-255)||(5525676-5525916)
chr3 (10-197)||(5490083-5490269)
chr3 (13-195)||(5828161-5828344)
chr3 (13-197)||(5502897-5503079)
chr3 (13-195)||(5454907-5455089)
chr3 (13-193)||(20343528-20343709)
chr3 (26-197)||(5446346-5446517)
chr3 (26-173)||(5854204-5854351)
chr3 (13-126)||(5848890-5849003)
chr3 (14-127)||(5802494-5802607)
chr3 (249-313)||(5525588-5525652)
chr3 (375-435)||(5525497-5525557)
chr3 (369-437)||(20343322-20343390)
[»] chr6 (1 HSPs)
chr6 (26-197)||(25809295-25809466)


Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 437
Target Start/End: Complemental strand, 5484872 - 5484450
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||   ||||||||| ||||||||||||||||||||||||    
T  5484872 agatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatcttca 5484773  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggtact 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  5484772 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgtgatag--ctggtact 5484675  T
Q  213 gataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5484674 gataccttaactgtttaattaataggaaaagattacaaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaaca 5484575  T
Q  313 taaaattacgcggcattaataatcctcttttcacttttccctatagatcttttttccttctttatctgcttcttgactgacatttacttcaaactacaga 412  Q
    |||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  5484574 taaaattacgtggcattaataattctcttttcacttttccctgtagatcttttttccttctttatctgcttcttgaatgacatttacttcaacctacaga 5484475  T
Q  413 tcatataaagaatacgagaaacttg 437  Q
    |||||||||||||||||||||||||    
T  5484474 tcatataaagaatacgagaaacttg 5484450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 13 - 255
Target Start/End: Complemental strand, 5525916 - 5525676
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   |||||||||||||||||||||  |||||||||||    
T  5525916 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatcttca 5525817  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgtgatagaactggtact 212  Q
    |||||||||||||| | |||| |  |||||||||  || |||||| |||||||| ||||  |||||| |||||||||||||||||||||||||||| |||    
T  5525816 gaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagcac--atttatatatttcatcatttgtgtgatagaactggcact 5525719  T
Q  213 gataccttaactgtttaattaataggaaaagattacaaaacat 255  Q
    | ||||||||| |||||||||||||||| ||||||||||||||    
T  5525718 gctaccttaacagtttaattaataggaatagattacaaaacat 5525676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 5490269 - 5490083
Alignment:
Q  10 caaagatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatct 109  Q
    ||||||||||||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| ||||||||    
T  5490269 caaagatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct 5490170  T
Q  110 tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 197  Q
    |||||||||||||||||||||||  |  ||||||||| ||| |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5490169 tcagaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgt 5490083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 5828161 - 5828344
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||  ||| ||||||||||||||||| ||||||||   ||||||||||||||||||||| || ||||||||     
T  5828161 agatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatcttcc 5828260  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttat-ttcatcatttgt 195  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||  || | |||||||||| ||| |||| |||||||    
T  5828261 gaacttggtattttcatttccaaagacatattttacctcttcagttagatgcataggacaaatttatatatattcagcatttgt 5828344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 5503079 - 5502897
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  5503079 agatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatcttca 5502980  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 197  Q
    || |||||||||||||||| | |  ||||||||| ||  |||||| |||||||  ||| |||||||  ||||||| |||||||||    
T  5502979 gagcttggtattttcatttgctattacatattttgtcctttcagttagatata--gcataaatttacatatttcaccatttgtgt 5502897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 5455089 - 5454907
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    ||||| |||||| |||||| |||||||||||  ||||||||||||||||||||| ||||  || |||||||||||||||||||||||| |||||||||||    
T  5455089 agatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca 5454990  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgt 195  Q
    ||||||||||||||| ||||  |  ||||||||| ||| |||||| |||||||| ||| ||| |||| ||||||| |||||||    
T  5454989 gaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgt 5454907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 20343709 - 20343528
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| || |||||||||||||||| ||| ||| ||||||||||||| ||||  || ||||||||||||||||| |||||||| |||||||||    
T  20343709 agatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatcttca 20343610  T
Q  113 gaacttggtattttcatttccaaagacatattttatctcttcagtcagatatattgcacaaattt-atttatttcatcattt 193  Q
    ||||||||||||||||||||| |  |||| ||||  || | |||| ||||||||||||||||||| || ||||||| |||||    
T  20343609 gaacttggtattttcatttcctattacatctttttcctttccagttagatatattgcacaaatttcatatatttcagcattt 20343528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 5446517 - 5446346
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5446517 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 5446418  T
Q  126 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 197  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  5446417 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 5446346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 5854204 - 5854351
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||||||||||| ||||||||| || |||||||| ||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5854204 ggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatcttcagaacttggtattt 5854303  T
Q  126 tcatttccaaagacatattttatctcttcagtcagatatattgcacaa 173  Q
     ||||||| |  |||| ||||  || ||||||| ||||||| ||||||    
T  5854304 acatttcctattacatcttttgccttttcagtctgatatatagcacaa 5854351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 5848890 - 5849003
Alignment:
Q  13 agatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttca 112  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||||||||| ||||||||   ||||||||||||||||||||| || |||||||||    
T  5848890 agatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatcttca 5848989  T
Q  113 gaacttggtatttt 126  Q
    ||||| ||||||||    
T  5848990 gaactcggtatttt 5849003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
Q  14 gatggtgggagcggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcag 113  Q
    |||||||| || ||||||||||||||||||  ||| ||| ||||||||||||| ||||| ||   ||||||||||||||||||||| || ||||||||||    
T  5802494 gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag 5802593  T
Q  114 aacttggtattttc 127  Q
    ||||||||||||||    
T  5802594 aacttggtattttc 5802607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 5525652 - 5525588
Alignment:
Q  249 aaaacatataaatgccaacttctggaaataatcaatctctaggaattatgtactgttaaaaacat 313  Q
    |||||| ||||||||||||||||| |||||||||| |||||||||||  |||| ||| |||||||    
T  5525652 aaaacacataaatgccaacttctgaaaataatcaacctctaggaattgagtaccgttcaaaacat 5525588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 5525557 - 5525497
Alignment:
Q  375 tatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaact 435  Q
    ||||||||| |||||||||||||||||||| |  ||||||||| |||||||| ||| ||||    
T  5525557 tatctgcttgttgactgacatttacttcaaccatcagatcataaaaagaataagaggaact 5525497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 20343390 - 20343322
Alignment:
Q  369 cttctttatctgcttcttgactgacatttacttcaaactacagatcatataaagaatacgagaaacttg 437  Q
    ||||| || |||||| |||||||||||||| ||||| |  ||||||||| |||||||| ||| ||||||    
T  20343390 cttctatacctgcttgttgactgacatttatttcaaccctcagatcataaaaagaataagaggaacttg 20343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 25809295 - 25809466
Alignment:
Q  26 ggctgcttactttggtttggcaacattgtggacatgagaaagcatcctgatcaaggacaagacatttacatacggctggcatcttcagaacttggtattt 125  Q
    ||||||||||| ||||||| | ||||||| ||||||||||  ||||  || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25809295 ggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggtattt 25809394  T
Q  126 tcatttccaaagacatattttatctcttcagtcagatatattgcacaaatttatttatttcatcatttgtgt 197  Q
    ||||||   |  ||||||||| ||  |||||| |||||||| ||| |||||||  ||||||| |||||||||    
T  25809395 tcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt 25809466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University