View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_263 (Length: 254)

Name: NF8260A_low_263
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_263
NF8260A_low_263
[»] chr5 (2 HSPs)
chr5 (80-248)||(41222154-41222322)
chr5 (12-82)||(41222675-41222747)
[»] chr8 (1 HSPs)
chr8 (98-227)||(13375861-13375997)
[»] chr6 (2 HSPs)
chr6 (98-227)||(16985223-16985359)
chr6 (115-152)||(16795006-16795043)
[»] chr3 (3 HSPs)
chr3 (161-227)||(38942998-38943064)
chr3 (116-227)||(7055522-7055640)
chr3 (161-227)||(38941597-38941663)
[»] scaffold0133 (1 HSPs)
scaffold0133 (187-227)||(6375-6415)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 41222322 - 41222154
Alignment:
Q  80 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagctagcgaccttatctttggaaactcac 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  41222322 ttgctgggatcactacttcaacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaatctagcgaccttatctttcgaaactcac 41222223  T
Q  180 tgatatgtaattcttgaagagaagtcatggccccctaccagtccggcagcggcgggcatcagcagttat 248  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41222222 tgatatgtaattcttgaagagaagtcatggcaccctaccagtccggcagcggcgggcatcagcagttat 41222154  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 41222747 - 41222675
Alignment:
Q  12 aatatttttataaagtgaccatatatttaagatatatat--cgtgtcacaataaatttacattacattaattg 82  Q
    ||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||    
T  41222747 aatatttttatgaagtgaccatatatttaagatatatatatcgtgttacaataaatttacattacattaattg 41222675  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 13375861 - 13375997
Alignment:
Q  98 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagc-------tagcgaccttatctttggaaactcactgatatgtaat 190  Q
    |||||||||| || |||||||||||||| |||||| ||||||||||||||||||||       ||| ||||||| ||| |||||| ||||||| | ||||    
T  13375861 caacatagagcaactaacaatacttaacctttgcaagtttcggagttgctgaaagctgtctggtagtgaccttaacttcggaaacccactgatttttaat 13375960  T
Q  191 tcttgaagagaagtcatggccccctaccagtccggca 227  Q
      |||||||| ||||||||| ||| ||||||| ||||    
T  13375961 ctttgaagagtagtcatggcacccaaccagtctggca 13375997  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 227
Target Start/End: Original strand, 16985223 - 16985359
Alignment:
Q  98 caacatagagaaattaacaatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaat 190  Q
    |||||||| | ||| || |||| ||||||||||||  ||||||||||||||||||||       || || |||| ||||||||| ||| |||| | ||||    
T  16985223 caacatagggcaatcaataataattaacttttgcaaatttcggagttgctgaaagctgtctggtagtgaacttaactttggaaagtcaatgatgtataat 16985322  T
Q  191 tcttgaagagaagtcatggccccctaccagtccggca 227  Q
    |||||||||||||||||||| ||| | ||||| ||||    
T  16985323 tcttgaagagaagtcatggcacccaaacagtctggca 16985359  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 16795006 - 16795043
Alignment:
Q  115 caatacttaacttttgcatgtttcggagttgctgaaag 152  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  16795006 caatacttaactcttgcaagtttcggagttgctgaaag 16795043  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 227
Target Start/End: Original strand, 38942998 - 38943064
Alignment:
Q  161 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggccccctaccagtccggca 227  Q
    |||| ||| |||||| ||||||| ||||||  |||||||||||||||||| ||| ||||||||||||    
T  38942998 cttaacttcggaaacccactgatttgtaatctttgaagagaagtcatggcacccaaccagtccggca 38943064  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 7055640 - 7055522
Alignment:
Q  116 aatacttaacttttgcatgtttcggagttgctgaaagct-------agcgaccttatctttggaaactcactgatatgtaattcttgaagagaagtcatg 208  Q
    ||||||||||||||| | |||| |||||||||||| |||       |||||||||| | | ||||||  |  ||| |||||| |||||||||||||||||    
T  7055640 aatacttaacttttgtaagttttggagttgctgaatgctgtctggtagcgaccttaacatcggaaacctagagatttgtaatacttgaagagaagtcatg 7055541  T
Q  209 gccccctaccagtccggca 227  Q
    || ||| ||||||||||||    
T  7055540 gcacccaaccagtccggca 7055522  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 38941663 - 38941597
Alignment:
Q  161 cttatctttggaaactcactgatatgtaattcttgaagagaagtcatggccccctaccagtccggca 227  Q
    |||| ||||||||||| |  ||| |||||| ||||||||||||||||||| ||| ||||||| ||||    
T  38941663 cttaactttggaaacttaaggatgtgtaatacttgaagagaagtcatggcacccaaccagtctggca 38941597  T

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Target: scaffold0133 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 6375 - 6415
Alignment:
Q  187 taattcttgaagagaagtcatggccccctaccagtccggca 227  Q
    |||| ||||||||||||||||||| ||| ||||||||||||    
T  6375 taatacttgaagagaagtcatggcacccaaccagtccggca 6415  T

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