View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_268 (Length: 251)

Name: NF8260A_low_268
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_268
NF8260A_low_268
[»] chr2 (1 HSPs)
chr2 (1-236)||(12689707-12689939)
[»] chr1 (3 HSPs)
chr1 (11-134)||(19749769-19749893)
chr1 (135-196)||(20963514-20963576)
chr1 (137-196)||(15157945-15158002)
[»] chr5 (3 HSPs)
chr5 (11-134)||(26863445-26863569)
chr5 (135-196)||(20679805-20679866)
chr5 (129-196)||(23421574-23421640)
[»] chr6 (2 HSPs)
chr6 (139-192)||(4282658-4282711)
chr6 (139-195)||(22622465-22622519)
[»] chr7 (1 HSPs)
chr7 (137-196)||(550543-550601)
[»] chr3 (1 HSPs)
chr3 (139-196)||(20012350-20012405)
[»] scaffold0013 (1 HSPs)
scaffold0013 (137-193)||(135652-135706)
[»] chr8 (3 HSPs)
chr8 (137-193)||(2236-2290)
chr8 (137-196)||(14673570-14673628)
chr8 (139-195)||(25548139-25548193)
[»] chr4 (1 HSPs)
chr4 (137-193)||(722943-722998)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 12689939 - 12689707
Alignment:
Q  1 tgaataatggtgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgacatcaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  12689939 tgaataatggtgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcaccagtgatggggtttgcggctgcgacatcaac 12689840  T
Q  101 ttcatgatcacctcggtataattgattaggtttattagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctcttgtta 200  Q
     ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12689839 gtcatgatcacctcggtataattgattaggt---ttagggtttccaaatcacgattcgtgattcagaaaacacggtcaaggttagttttacctcttgtta 12689743  T
Q  201 aaagtacaataatcgaattagaattagggtttgtat 236  Q
    |||||||||||||| |||||||||||||||||||||    
T  12689742 aaagtacaataatcaaattagaattagggtttgtat 12689707  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 19749893 - 19749769
Alignment:
Q  11 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 109  Q
    |||||||||||||||||||||||| ||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||||||||||||| |||||  |||||||    
T  19749893 tgcacatggttgtcgatgcctccgcagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcggctgcgacattcaacgccatgatc 19749794  T
Q  110 acctcggtataattgattaggttta 134  Q
     |||||| |||||||||||||||||    
T  19749793 ccctcggcataattgattaggttta 19749769  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 20963514 - 20963576
Alignment:
Q  135 ttagggtttccaaatcacgattc-gtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||||||||||||||| ||||  | ||||||||||||| ||||||||||| |||||||||||    
T  20963514 ttagggtttccaaatcaagattttgcgattcagaaaacgtggtcaaggttaattttacctctt 20963576  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 15157945 - 15158002
Alignment:
Q  137 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  15157945 agggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 15158002  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 26863445 - 26863569
Alignment:
Q  11 tgcacatggttgtcgatgcctccgtagatgacgttgatattgtttctcggccgcatcacaagtgatagggtttgcggctgcgaca-tcaacttcatgatc 109  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||| ||| ||||||  |  ||| |||||||| ||||||||| |||||  |||||||    
T  26863445 tgcacatggttgtcgatgcctccatagatgacgttcgtattgcttcttggcggcatcatcaacgatggggtttgcagctgcgacattcaacgccatgatc 26863544  T
Q  110 acctcggtataattgattaggttta 134  Q
     |||||| |||||||||||||||||    
T  26863545 ccctcggcataattgattaggttta 26863569  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 20679805 - 20679866
Alignment:
Q  135 ttagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||||||||||| |||||||| | ||||||||||| | |||||||||||||||||||||||    
T  20679805 ttagggtttccaagtcacgatttgagattcagaaaatgtggtcaaggttagttttacctctt 20679866  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 23421640 - 23421574
Alignment:
Q  129 ggtttattagggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||| ||||||||||||||||| |||| | ||||||| ||||| |||||||||| ||||||||||||    
T  23421640 ggtttcttagggtttccaaatcatgatttgcgattcag-aaacgtggtcaaggtttgttttacctctt 23421574  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 4282658 - 4282711
Alignment:
Q  139 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacc 192  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  4282658 ggtttccaaatcacgatttgtgatccagaaaacgtggtcaaggttagttttacc 4282711  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 22622465 - 22622519
Alignment:
Q  139 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 195  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  22622465 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 22622519  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 550543 - 550601
Alignment:
Q  137 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||||||| |||||||||| | |||||||||| || |||||||||||||||||| ||||    
T  550543 agggtttccgaatcacgatttgcgattcagaaa-cgtggtcaaggttagttttacgtctt 550601  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 20012350 - 20012405
Alignment:
Q  139 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    ||||||||||||||||||  ||||||||||| || |||| ||||||||||||||||||    
T  20012350 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctctt 20012405  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 135652 - 135706
Alignment:
Q  137 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 193  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  135652 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 135706  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 2236 - 2290
Alignment:
Q  137 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 193  Q
    ||||||||||||||||||||  |||||||| ||||| |||| |||||||||||||||    
T  2236 agggtttccaaatcacgatt-ttgattcag-aaacgtggtcgaggttagttttacct 2290  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 14673628 - 14673570
Alignment:
Q  137 agggtttccaaatcac-gattcgtgattcagaaaacgcggtcaaggttagttttacctctt 196  Q
    |||||||||||||||| ||||| ||||||||||| || |||| ||||||||||||||||||    
T  14673628 agggtttccaaatcacagattc-tgattcagaaa-cgtggtcgaggttagttttacctctt 14673570  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 25548193 - 25548139
Alignment:
Q  139 ggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacctct 195  Q
    ||||||||||||||||||  ||||||||||| || |||| |||||||||||||||||    
T  25548193 ggtttccaaatcacgattt-tgattcagaaa-cgtggtcgaggttagttttacctct 25548139  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 722998 - 722943
Alignment:
Q  137 agggtttccaaatcacgattcgtgattcagaaaacgcggtcaaggttagttttacct 193  Q
    ||||||| | |||||||||| ||||||| |||| || ||||||||||||||||||||    
T  722998 agggtttacgaatcacgatttgtgattcggaaa-cgtggtcaaggttagttttacct 722943  T

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