View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_270 (Length: 251)
Name: NF8260A_low_270
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_270 |
 | |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 48066587 - 48066831
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48066587 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacattctcgttcacaacgtcccatgcaattaattgtccactatatct |
48066686 |
T |
|
| Q |
101 |
tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatccttcatcgttccacaaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
48066687 |
tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatctttcatcgtcccacaaa |
48066786 |
T |
|
| Q |
201 |
atggcatgacctctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066787 |
atggcatgacctctgacagaaatgccattttctttggcaaatttc |
48066831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 48099543 - 48099776
Alignment:
| Q |
12 |
gaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaacag |
111 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||||||||||||||| |||||| ||||| |||||||| |||| |
|
|
| T |
48099543 |
gaggcattttcgccgagtttgttctcaaaaaagtggtagtggacattctcattcacaacgtcccatgcaatcagttgtcctctataccttgaaaccacag |
48099642 |
T |
|
| Q |
112 |
atttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatccttcatcgttccacaaaatggcatgacc |
211 |
Q |
| |
|
|| | ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||||||| |||||||| ||| |||| || |||||| |
|
|
| T |
48099643 |
atcttattctttttgcagccgcttttcgtaattcttcaggagataggaacttaacccatttaggctgaaaagtttcatcgtcccagaaaacggtatgacc |
48099742 |
T |
|
| Q |
212 |
tctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
48099743 |
tctgacagaaatgccattttctttggcgaatttc |
48099776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 48062500 - 48062742
Alignment:
| Q |
3 |
tatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatcttg |
102 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||| || ||||| ||||| || || ||||||||||||||||||||||| |||| |||| |
|
|
| T |
48062500 |
tatactgcagaggcatttttgccgaggttgtcctcaaaaaagtggaagtggacattctcatttaccacgtcccatgcaatcaattgtcctttataccttg |
48062599 |
T |
|
| Q |
103 |
aaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatccttcatcgttccacaaaat |
202 |
Q |
| |
|
| || || |||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||| || ||| || |||| || ||||||||| |
|
|
| T |
48062600 |
agaccacggatttcattctttttgcagctgcttctcgtaattcatcaggagacagggacaaatcccattcaggttgacgtctttcactgtcccacaaaat |
48062699 |
T |
|
| Q |
203 |
ggcatgacctctgacagaaatgccattttctttggcaaatttc |
245 |
Q |
| |
|
| ||||||||||||||| ||||||||||| || ||||||||| |
|
|
| T |
48062700 |
gttatgacctctgacagatatgccattttccttagcaaatttc |
48062742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 48106142 - 48106375
Alignment:
| Q |
10 |
cagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatcttgaaacaac |
109 |
Q |
| |
|
|||| |||||||| || |||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||| ||| |||| ||| |||||| |
|
|
| T |
48106142 |
cagatgcattttcacctagtttgtcctcataaaagtgaaaatggacattttcattcaccacatcccatgcaatcaattctcctttataccttttaacaac |
48106241 |
T |
|
| Q |
110 |
agatttcattctttttgcagccgcttctcgtaattcttcaggagatagggacttcacccattggggctgaaatccttcatcgttccacaaaatggcatga |
209 |
Q |
| |
|
||||| ||||||||| || |||| || ||||| || || |||| |||| ||||||| || ||| || |||||||| ||| |||||| |||| |
|
|
| T |
48106242 |
agattcgattctttttttcgcggctttgcgcaattcatcgggcgataaatacttaacccattcaggttgatatttttcatcgtcccagaaaatgttatga |
48106341 |
T |
|
| Q |
210 |
cctctgacagaaatgccattttctttggcaaatt |
243 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
48106342 |
cctctgacagaaattccattatctttagcaaatt |
48106375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 1005 - 849
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1005 |
aatatactgcagaggcattttctccgagtttgtcctaaaaaaatcggttgtggacattctcgttcacaacgtcccatgcaatcaattgtccactatatct |
906 |
T |
|
| Q |
101 |
tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag |
157 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
905 |
tgaaaccacagatttcattctttttgcagccgcttctcgtaattcttcaggagatag |
849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 50231227 - 50231389
Alignment:
| Q |
1 |
aatatactgcagaggcattttcgccgagtttgtcctcaaaaaagcggttatggacgttctcgttcacaacgtcccatgcaatcaattgtccactatatct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
50231227 |
aatatactgcagaggcatttttgccgagtttgtcctcaaaaaaccggttgtggacattctcgtttacaacgtcccatgcaatcaattgtccactatatct |
50231326 |
T |
|
| Q |
101 |
tgaaacaacagatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt |
163 |
Q |
| |
|
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50231327 |
tgaaaccaaaaatttcattctttttgcagccgcttctcgtaattcttcaggagatagggactt |
50231389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University