View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_271 (Length: 251)
Name: NF8260A_low_271
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_271 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4082901 - 4083151
Alignment:
| Q |
1 |
agaaatcccttacatagataatatccttttgcatgggaaaaagattgccctatgccaattccaataattcattgataggtccatttctatatttttcatt |
100 |
Q |
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| T |
4082901 |
agaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttattaataggtccatttctaaatttttcatt |
4083000 |
T |
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| Q |
101 |
ctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccgata |
200 |
Q |
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| T |
4083001 |
ctccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccgata |
4083100 |
T |
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| Q |
201 |
tcaaacaccaaagaagccacaaccacggacaaaaacacaacgaacgctaca |
251 |
Q |
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| T |
4083101 |
tcaaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctaca |
4083151 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
125 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
168 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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