View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_274 (Length: 250)

Name: NF8260A_low_274
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_274
NF8260A_low_274
[»] chr6 (2 HSPs)
chr6 (75-247)||(30775124-30775297)
chr6 (75-148)||(6067534-6067608)
[»] chr5 (2 HSPs)
chr5 (78-144)||(41807254-41807320)
chr5 (101-134)||(41383510-41383543)
[»] scaffold1137 (1 HSPs)
scaffold1137 (79-135)||(850-907)
[»] chr8 (4 HSPs)
chr8 (101-150)||(3049097-3049146)
chr8 (101-148)||(3036525-3036572)
chr8 (75-144)||(15808692-15808762)
chr8 (101-134)||(45312840-45312873)
[»] chr2 (4 HSPs)
chr2 (75-135)||(6508369-6508430)
chr2 (101-134)||(44949248-44949281)
chr2 (80-147)||(42088484-42088552)
chr2 (80-132)||(9582992-9583044)
[»] chr4 (5 HSPs)
chr4 (101-148)||(44369017-44369064)
chr4 (79-148)||(37175762-37175832)
chr4 (79-148)||(39292319-39292389)
chr4 (79-144)||(50620627-50620693)
chr4 (75-134)||(24943576-24943636)
[»] chr7 (1 HSPs)
chr7 (75-126)||(28517775-28517827)
[»] chr3 (2 HSPs)
chr3 (81-150)||(34706171-34706241)
chr3 (75-148)||(36924544-36924617)


Alignment Details
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 247
Target Start/End: Complemental strand, 30775297 - 30775124
Alignment:
Q  75 tgttaaatttcatatagaaaaagttattttt-aatctttcaataagttgaatacacaatttctaaaataaagttgttcataacacttgttagcatttctc 173  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  30775297 tgttaaatttcatatagaaaaagttattttttaatctttcaataagttgaatatacaatttctaaaataaagttgttcatgacacttgttagcatttctc 30775198  T
Q  174 tatcttaatatttatttttacatatgtgatcaaataaaattattcaacaattcatttcctatattattcgacat 247  Q
    ||  |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| |||||    
T  30775197 taaattaatatttatttttacatatgcgatgaaataaaattattcaacaattcatttcctatatgatttgacat 30775124  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 6067534 - 6067608
Alignment:
Q  75 tgttaaatttcatatagaaaaagtta-tttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    ||||||||||||| |||||||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  6067534 tgttaaatttcatgtagaaaaagtttctttttaatcgttcaataagttgaatacacaatttctaagataaagttg 6067608  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 41807254 - 41807320
Alignment:
Q  78 taaatttcatatagaaaaagttatttttaatctttcaataagttgaatacacaatttctaaaataaa 144  Q
    ||||||| || |||||||||||| ||||||| |||||||| ||||||||||||||||  ||||||||    
T  41807254 taaattttatgtagaaaaagttacttttaatatttcaataggttgaatacacaatttacaaaataaa 41807320  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 41383510 - 41383543
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaattt 134  Q
    |||||||| |||||||||||||||||||||||||    
T  41383510 tttttaatatttcaataagttgaatacacaattt 41383543  T

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Target: scaffold1137 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 135
Target Start/End: Complemental strand, 907 - 850
Alignment:
Q  79 aaatttcatatagaaaaagttat-ttttaatctttcaataagttgaatacacaatttc 135  Q
    ||||||||| ||||||||||| | |||||||||||||||||||||||| |||||||||    
T  907 aaatttcatgtagaaaaagttgtgttttaatctttcaataagttgaatgcacaatttc 850  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 3049097 - 3049146
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaatttctaaaataaagttgtt 150  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  3049097 tttttaaactttcaataaattgaatacacaatttctaagataaagttgtt 3049146  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 3036525 - 3036572
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    |||||||||||| ||||||||||||||||||||| ||| |||||||||    
T  3036525 tttttaatcttttaataagttgaatacacaatttttaagataaagttg 3036572  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 15808692 - 15808762
Alignment:
Q  75 tgttaaatttcatatagaaaaagtta-tttttaatctttcaataagttgaatacacaatttctaaaataaa 144  Q
    |||||||||| || || ||||||||  ||||||||||||||||||||| |||||||||||| ||| |||||    
T  15808692 tgttaaattttatgtataaaaagttcctttttaatctttcaataagttaaatacacaatttttaagataaa 15808762  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 45312840 - 45312873
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaattt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  45312840 tttttaatctttcaataagttgaatacacaattt 45312873  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 6508430 - 6508369
Alignment:
Q  75 tgttaaatttcatatagaaaaagttatt-tttaatctttcaataagttgaatacacaatttc 135  Q
    |||||||||||||  |||||||||| || ||||||||||||||||||||||| |||||||||    
T  6508430 tgttaaatttcatgaagaaaaagttgttatttaatctttcaataagttgaatgcacaatttc 6508369  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 44949281 - 44949248
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaattt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  44949281 tttttaatctttcaataagttgaatacacaattt 44949248  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 42088552 - 42088484
Alignment:
Q  80 aatttcatatagaaaaagtta-tttttaatctttcaataagttgaatacacaatttctaaaataaagtt 147  Q
    ||||| || |||||||||||  ||||||||||||||||| |||||||| |||||||| || ||||||||    
T  42088552 aattttatgtagaaaaagttgctttttaatctttcaataggttgaataaacaatttccaagataaagtt 42088484  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9582992 - 9583044
Alignment:
Q  80 aatttcatatagaaaaagttatttttaatctttcaataagttgaatacacaat 132  Q
    |||||||| |||||||  |  ||||||||| ||||||||||||||||||||||    
T  9582992 aatttcatgtagaaaagttgttttttaatcattcaataagttgaatacacaat 9583044  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 44369064 - 44369017
Alignment:
Q  101 tttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    |||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  44369064 tttttaatctttcaataaattgaatacacaatttttaagataaagttg 44369017  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 37175762 - 37175832
Alignment:
Q  79 aaatttcatatagaaaaa-gttatttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    |||||| ||||||||||| ||  ||||||||||||||||||||||||| || |||||| || |||||||||    
T  37175762 aaattttatatagaaaaatgtgctttttaatctttcaataagttgaatgcataatttccaagataaagttg 37175832  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 39292389 - 39292319
Alignment:
Q  79 aaatttcatatagaaaaagtta-tttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    |||||| || |||||||||||  ||||||||||||||||||||||||| || |||||| || |||||||||    
T  39292389 aaatttaatgtagaaaaagttgctttttaatctttcaataagttgaatgcataatttccaagataaagttg 39292319  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 50620693 - 50620627
Alignment:
Q  79 aaatttcatatagaaaaagtta-tttttaatctttcaataagttgaatacacaatttctaaaataaa 144  Q
    |||||| ||||||||||||||  |||||| | |||||||||||||||| ||||||||| || |||||    
T  50620693 aaattttatatagaaaaagttgctttttactatttcaataagttgaatgcacaatttccaagataaa 50620627  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 24943576 - 24943636
Alignment:
Q  75 tgttaaatttcatatagaaaaagttatttt-taatctttcaataagttgaatacacaattt 134  Q
    ||||||| || || ||||||||||| |||| |||||||||||||| || ||||||||||||    
T  24943576 tgttaaactttatgtagaaaaagttgttttttaatctttcaataaattaaatacacaattt 24943636  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 28517827 - 28517775
Alignment:
Q  75 tgttaaatttcatatagaaaaagtta-tttttaatctttcaataagttgaata 126  Q
    ||||||||||||| || ||||||||  ||||||||||||||||||||||||||    
T  28517827 tgttaaatttcatgtaaaaaaagttgctttttaatctttcaataagttgaata 28517775  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 34706241 - 34706171
Alignment:
Q  81 atttcatatagaaaaagtt-atttttaatctttcaataagttgaatacacaatttctaaaataaagttgtt 150  Q
    ||||||| || |||||||| ||||||| |||||||||||||| ||| ||||||||| || ||||| |||||    
T  34706241 atttcatgtaaaaaaagttgatttttattctttcaataagttaaatgcacaatttcaaagataaaattgtt 34706171  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 36924617 - 36924544
Alignment:
Q  75 tgttaaatttcatatagaaaaagttatttttaatctttcaataagttgaatacacaatttctaaaataaagttg 148  Q
    |||||||||| || || ||||| |  |||||||||||||||||| ||||| || ||||||  ||||||||||||    
T  36924617 tgttaaattttatgtaaaaaaattgctttttaatctttcaataaattgaacacgcaattttcaaaataaagttg 36924544  T

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