View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_275 (Length: 250)

Name: NF8260A_low_275
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_275
NF8260A_low_275
[»] chr7 (5 HSPs)
chr7 (7-250)||(41075685-41075928)
chr7 (64-155)||(13311344-13311435)
chr7 (39-155)||(15714603-15714719)
chr7 (49-150)||(15714407-15714507)
chr7 (39-127)||(23608809-23608897)
[»] chr5 (11 HSPs)
chr5 (39-153)||(14848740-14848854)
chr5 (63-153)||(14849020-14849110)
chr5 (39-153)||(15644725-15644839)
chr5 (39-153)||(5326058-5326172)
chr5 (63-149)||(5326336-5326422)
chr5 (63-145)||(4700433-4700515)
chr5 (172-242)||(14848844-14848914)
chr5 (70-152)||(15645026-15645108)
chr5 (50-155)||(12904766-12904871)
chr5 (197-242)||(28621057-28621102)
chr5 (172-250)||(5326162-5326239)
[»] chr2 (4 HSPs)
chr2 (39-145)||(16105553-16105659)
chr2 (39-155)||(17266399-17266515)
chr2 (44-155)||(11721401-11721512)
chr2 (103-145)||(17266651-17266693)
[»] chr8 (10 HSPs)
chr8 (64-153)||(9499910-9499999)
chr8 (44-154)||(22890306-22890416)
chr8 (39-154)||(31873211-31873326)
chr8 (49-155)||(24085784-24085891)
chr8 (39-153)||(11291028-11291142)
chr8 (33-151)||(13084802-13084920)
chr8 (44-153)||(22890104-22890212)
chr8 (64-155)||(20050109-20050200)
chr8 (199-249)||(9499762-9499812)
chr8 (107-145)||(11754845-11754883)
[»] chr1 (7 HSPs)
chr1 (34-153)||(22103606-22103724)
chr1 (39-153)||(9443573-9443687)
chr1 (44-148)||(19227177-19227281)
chr1 (63-156)||(22103816-22103909)
chr1 (64-155)||(13245876-13245967)
chr1 (49-152)||(32927269-32927372)
chr1 (39-155)||(42267304-42267420)
[»] chr3 (8 HSPs)
chr3 (39-155)||(20704431-20704547)
chr3 (39-154)||(20704639-20704754)
chr3 (44-154)||(30380852-30380962)
chr3 (39-153)||(44654618-44654731)
chr3 (44-88)||(26479303-26479347)
chr3 (61-153)||(30381057-30381149)
chr3 (39-155)||(44654814-44654930)
chr3 (27-88)||(26479059-26479120)
[»] scaffold0291 (3 HSPs)
scaffold0291 (64-149)||(6525-6610)
scaffold0291 (49-148)||(6746-6845)
scaffold0291 (184-250)||(6616-6682)
[»] chr6 (3 HSPs)
chr6 (64-153)||(13378551-13378640)
chr6 (67-153)||(26464512-26464598)
chr6 (107-151)||(12187803-12187847)
[»] chr4 (1 HSPs)
chr4 (39-153)||(11857893-11858007)
[»] scaffold0027 (1 HSPs)
scaffold0027 (111-153)||(14103-14145)
[»] scaffold0117 (1 HSPs)
scaffold0117 (50-154)||(15761-15866)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 41075928 - 41075685
Alignment:
Q  7 tcgaataatatcaatacacctatatatttaaagcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatct 106  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||    
T  41075928 tcgaataaaaccaatacacctatatatttaaagcttctatatgtgtttagcctatgcaaataggggtcatttaaaaaatggtccttacatttcttgatct 41075829  T
Q  107 tgacatttttccctcccaaaatataatcatttaaaatttggtccctctctttccttaaaaaattttttggtccctctccccacttaattgcaaagtttgg 206  Q
    |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  41075828 tagcatttttccctcccaaaatataatcatttaaaatttggttcctctcttttcttaaaaatttttttggtccctctccccacttaattgcaaagtttgg 41075729  T
Q  207 cgtgaagtgacaaaactatctctccttccatcagagggaagcgg 250  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  41075728 cgtgaagtgacaaaaatatctctccttccatcagagggaagcgg 41075685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 13311435 - 13311344
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctctc 155  Q
    |||||||||||||||||| |||||||| || |||  || ||||| ||| ||| |||| ||||||| |||| ||||||||||| |||||||||    
T  13311435 aaataggggtcatttaaacaatggttcatgtattcgttaatcttaacaatttgcccttccaaaatttaataatttaaaatttcgtccctctc 13311344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 15714719 - 15714603
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| |||||||||||||||||||| ||||   |||||| ||| ||| ||||||||| |||| |||| || |||||| ||    
T  15714719 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaaattggtctctgcattccttaatcctgacattttgccctgccaagatttaatcactt 15714620  T
Q  139 aaaatttggtccctctc 155  Q
    || |||| || ||||||    
T  15714619 aacatttcgttcctctc 15714603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 15714407 - 15714507
Alignment:
Q  49 gtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggt 148  Q
    |||||||| | ||| ||||| ||||||||||||| ||||||| || ||| ||| ||| || |||||| |||| ||||||| | |||| |||||| |||||    
T  15714407 gtgtttagtccctgcaaatatgggtcatttaaaa-atggttcatgtattccttaatcctggcattttgccctgccaaaatttcatcacttaaaaattggt 15714505  T
Q  149 cc 150  Q
    ||    
T  15714506 cc 15714507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 23608809 - 23608897
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaa 127  Q
    |||| |||| |||||||| |  || |||||||||||||||||||| |||| | || ||||||| ||| || |||||| |||| ||||||    
T  23608809 gcttttatatgtgtttagtccttgcaaataggggtcatttaaaaattggtccctgtatttcttaatcctggcattttgccctgccaaaa 23608897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 14848740 - 14848854
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| |||||||| |||||||||||||||||  |||||| ||| ||| |  ||||||||||||||||||| |||||||||    
T  14848740 gcttttatatgtgtttagtccctgcaaatagggatcatttaaaaaatggtttgtgcattccttaatccttgcatttttccctcccaaaatttaatcattt 14848839  T
Q  139 aaaatttggtccctc 153  Q
    |||||||||||||||    
T  14848840 aaaatttggtccctc 14848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 14849110 - 14849020
Alignment:
Q  63 taaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    ||||||||| |||||||||||||||| | || ||| ||| ||| || |||||| |||| ||||||| ||||||||||||||||||||||||    
T  14849110 taaatagggatcatttaaaaaatggtccatgtattccttaatcgtggcattttgccctaccaaaatttaatcatttaaaatttggtccctc 14849020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 15644725 - 15644839
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | |||||||||| |||||||||||||||| | |  | ||| ||| ||| |||||||||| ||||||||||| ||||||||     
T  15644725 gcttttatatgtgtttagtccctgtaaatagaggtcatttaaaaaatgatccccgtattccttaatcctgacattttttcctcccaaaatttaatcattc 15644824  T
Q  139 aaaatttggtccctc 153  Q
    ||||||||| |||||    
T  15644825 aaaatttggcccctc 15644839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 5326058 - 5326172
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||  | ||| ||||||||||||||||||||||||| | |||||| ||| ||| || |||||| ||||  |||||| ||||| |||    
T  5326058 gcttttatatgtgtttaatccctgcaaataggggtcatttaaaaaatggtccctgcattccttaatcctggcattttgccctttcaaaatttaatctttt 5326157  T
Q  139 aaaatttggtccctc 153  Q
    |||||||||| ||||    
T  5326158 aaaatttggttcctc 5326172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 5326422 - 5326336
Alignment:
Q  63 taaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtc 149  Q
    |||||||||||||||||||||||||| | |||||| ||| ||| || ||||||  ||||||||||| |||| |||||||||| ||||    
T  5326422 taaataggggtcatttaaaaaatggtccatgcattccttaatcatggcattttgtcctcccaaaatttaataatttaaaattcggtc 5326336  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 4700515 - 4700433
Alignment:
Q  63 taaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaattt 145  Q
    |||||||||||||||||||||||| |||||| |||  || ||  ||||| |||||||| ||||||| | ||||||||||||||    
T  4700515 taaataggggtcatttaaaaaatgattcttgtattcattaattatgacaattttcccttccaaaattttatcatttaaaattt 4700433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 14848844 - 14848914
Alignment:
Q  172 tttggtccctctccccacttaattgcaaagtttggcgtgaagtgacaaaactatctctccttccatcagag 242  Q
    ||||||||||| |||||||||||  ||||||||| ||||||||||||||| || | ||||||| |||||||    
T  14848844 tttggtccctccccccacttaatcacaaagtttgacgtgaagtgacaaaaatacccctccttcaatcagag 14848914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 15645108 - 15645026
Alignment:
Q  70 gggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccct 152  Q
    |||||||||||||| |||||  || |||  || ||| ||||||||| |||||||||||| |||||||||||||||| ||||||    
T  15645108 gggtcatttaaaaattggtttatgtattcgttaatcctgacattttgccctcccaaaatttaatcatttaaaatttcgtccct 15645026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 155
Target Start/End: Original strand, 12904766 - 12904871
Alignment:
Q  50 tgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtc 149  Q
    ||||||| | || ||||||||| |||||||||||||||| | || |||  || ||| ||||| |||  ||||||||||| |||| ||||||||||| |||    
T  12904766 tgtttagtccctctaaatagggatcatttaaaaaatggtccctgtattcgttaatcctgacaatttgtcctcccaaaatttaataatttaaaatttcgtc 12904865  T
Q  150 cctctc 155  Q
    ||||||    
T  12904866 cctctc 12904871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 28621057 - 28621102
Alignment:
Q  197 caaagtttggcgtgaagtgacaaaactatctctccttccatcagag 242  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  28621057 caaagtttggcttgaagtgacaaaaatatctctccttccatcagag 28621102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 5326162 - 5326239
Alignment:
Q  172 tttggtccctctccccacttaattgcaaagtttggcgtgaagtgacaaaactatctctccttccatcagagggaagcgg 250  Q
    |||||| ||||  |||||||||| |||| |||| || ||||||||| ||| |||| ||||||||||||||||| |||||    
T  5326162 tttggttcctccacccacttaatcgcaa-gttttgcatgaagtgaccaaaatatccctccttccatcagagggcagcgg 5326239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 16105553 - 16105659
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||||||||||||| ||||||||||||||| | |||||| ||| ||| ||||||||| |||||||||||| |||||||||    
T  16105553 gcttttatatgtgtttagtccctgtaaataggggccatttaaaaaatggtccctgcattccttaatcctgacattttgccctcccaaaatttaatcattt 16105652  T
Q  139 aaaattt 145  Q
    |||||||    
T  16105653 aaaattt 16105659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 17266399 - 17266515
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | |||||||||||| ||||||||||||||||   || |||  || ||| ||||| |||||||| ||||||| |||||||||    
T  17266399 gcttttatatgtgtttagtccctgtaaatagggatcatttaaaaaatggtcaatgtattcgtttatcctgacaattttcccttccaaaatttaatcattt 17266498  T
Q  139 aaaatttggtccctctc 155  Q
    |||||||||||||||||    
T  17266499 aaaatttggtccctctc 17266515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 11721512 - 11721401
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaat 143  Q
    |||| |||||||| || || |||||||||||||||||||| || | | || |||  || ||| |||||||||  ||| ||||||| |||||| |||||||    
T  11721512 tatatgtgtttagtctttggaaataggggtcatttaaaaattgatccctgtattctttaatcctgacattttatcctgccaaaatttaatcacttaaaat 11721413  T
Q  144 ttggtccctctc 155  Q
    || ||| |||||    
T  11721412 ttcgtctctctc 11721401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 145
Target Start/End: Complemental strand, 17266693 - 17266651
Alignment:
Q  103 atcttgacatttttccctcccaaaatataatcatttaaaattt 145  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||    
T  17266693 atcttgacaatttgccctcccaaaatttaatcatttaaaattt 17266651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 9499999 - 9499910
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    |||||||||||  |||||||||||||| || ||||||| ||| ||||||||| |||||||||||| ||||||||||||||||| ||||||    
T  9499999 aaataggggtcgattaaaaaatggttcatgtatttcttaatcctgacattttaccctcccaaaatttaatcatttaaaatttgatccctc 9499910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 22890416 - 22890306
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaat 143  Q
    |||| |||||||| | ||| ||||||||||||||||||| ||||| | || ||| ||| ||||||||||||||||||  |||||| |||||| |||||||    
T  22890416 tatatgtgtttagtccctgcaaataggggtcatttaaaacatggtacctgtattccttaatcttgacatttttccctggcaaaatctaatcacttaaaat 22890317  T
Q  144 ttggtccctct 154  Q
    || ||||||||    
T  22890316 tttgtccctct 22890306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 31873326 - 31873211
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| ||||| ||||||||||||||||||| |||  |||  || |||||| || ||| |||||||||||| |||||||||    
T  31873326 gcttttatatgtgtttagtccctgcaaatatgggtcatttaaaaaatggtccttttattcgttaatcttggcaatttgccctcccaaaatttaatcattt 31873227  T
Q  139 aaaatttggtccctct 154  Q
    ||||||| || |||||    
T  31873226 aaaattttgttcctct 31873211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 24085784 - 24085891
Alignment:
Q  49 gtgtttagcctctgtaaatag-gggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttgg 147  Q
    |||||||| | ||| |||||| ||||||| ||||||||||| |||| ||||||| ||| |||||||||  ||| ||||||| |||||  ||||||||| |    
T  24085784 gtgtttagtccctgcaaatagagggtcatataaaaaatggtccttgtatttcttaatcctgacattttgtcctgccaaaatttaatcgcttaaaattttg 24085883  T
Q  148 tccctctc 155  Q
    ||||||||    
T  24085884 tccctctc 24085891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 11291028 - 11291142
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||||||||||||   ||  ||||||| |||||||||||||||||||||| ||| ||| ||| ||| ||||| || | ||||||| |||||| ||    
T  11291028 gcttttatacgtgtttagttcctacaaataggagtcatttaaaaaatggttcttgtattccttaatcctgatattttgccatgccaaaatttaatcactt 11291127  T
Q  139 aaaatttggtccctc 153  Q
    |||| ||||| ||||    
T  11291128 aaaaattggttcctc 11291142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 13084920 - 13084802
Alignment:
Q  33 tttaaagcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataa 132  Q
    ||||| |||| |||| |||||||| ||||| ||||| | |||||||||||| |||| | || ||| ||| ||||||  ||||| |||| ||||||| |||    
T  13084920 tttaaggcttttatatgtgtttagtctctgcaaatatgagtcatttaaaaattggtccatgtattccttaatcttggaattttgccctgccaaaatttaa 13084821  T
Q  133 tcatttaaaatttggtccc 151  Q
    ||| |||||| ||||||||    
T  13084820 tcacttaaaaattggtccc 13084802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 22890104 - 22890212
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaat 143  Q
    |||| |||||||| | | |||||||||||||||||||||||||| ||||| ||| ||| ||| |||||||||  ||   |||||| |||||| ||||||     
T  22890104 tatatgtgtttagtcccggtaaataggggtcatttaaaaaatgg-tcttgtattccttaatcatgacattttgtcccgtcaaaatttaatcacttaaaaa 22890202  T
Q  144 ttggtccctc 153  Q
    ||||||||||    
T  22890203 ttggtccctc 22890212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 20050109 - 20050200
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctctc 155  Q
    |||||||||||||||||||| |||| | || ||| ||| ||  || |||||| |||| ||||||| |||||| ||||||||| |||||||||    
T  20050109 aaataggggtcatttaaaaattggtccatgtattccttaattctggcattttgccctgccaaaatttaatcacttaaaatttcgtccctctc 20050200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 9499762 - 9499812
Alignment:
Q  199 aagtttggcgtgaagtgacaaaactatctctccttccatcagagggaagcg 249  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||| ||||    
T  9499762 aagtttggcatgaagtgacaaaaatacctctccttccatcagagggcagcg 9499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 11754883 - 11754845
Alignment:
Q  107 tgacatttttccctcccaaaatataatcatttaaaattt 145  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  11754883 tgacattttaccctcccaaaatttaatcatttaaaattt 11754845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 153
Target Start/End: Original strand, 22103606 - 22103724
Alignment:
Q  34 ttaaagcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataat 133  Q
    |||| |||| ||||||||||||| | | ||||||||||||||||||||||||||| | || |||| || |||||| |||||| |||| |||||||  |||    
T  22103606 ttaaggcttttatacgtgtttagtccc-gtaaataggggtcatttaaaaaatggtccatgtattttttaatcttggcattttgcccttccaaaattgaat 22103704  T
Q  134 catttaaaatttggtccctc 153  Q
    || |||||| ||||||||||    
T  22103705 cacttaaaaattggtccctc 22103724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 9443573 - 9443687
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| |  || |||||||||||||||||||||||||   || ||| ||| ||| || ||||||  ||||||||||| |||||||||    
T  9443573 gcttttatatgtgtttagtccttgcaaataggggtcatttaaaaaatggtctctgtattccttaatcctggcattttgtcctcccaaaatttaatcattt 9443672  T
Q  139 aaaatttggtccctc 153  Q
    |||||||||||||||    
T  9443673 aaaatttggtccctc 9443687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 19227281 - 19227177
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaat 143  Q
    |||| |||||||| ||||  ||||| |||||||||||||||| || |||| ||| ||| ||| ||||||||| |||| ||||||| |||||| ||||||     
T  19227281 tatatgtgtttagtctctacaaataagggtcatttaaaaaatagtccttgtattccttaatcctgacattttgccctgccaaaatttaatcacttaaaaa 19227182  T
Q  144 ttggt 148  Q
    |||||    
T  19227181 ttggt 19227177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 22103909 - 22103816
Alignment:
Q  63 taaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctctct 156  Q
    |||||||||||||||||||||||||| | || |||| || ||| ||  ||||| ||||  |||||| |||||| ||||||||| ||||||||||    
T  22103909 taaataggggtcatttaaaaaatggtccatgtattttttaatcctgctattttgccctgtcaaaatttaatcacttaaaatttcgtccctctct 22103816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 13245876 - 13245967
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctctc 155  Q
    |||||||  ||||||||||| |||| |||| ||| ||| ||| || |||||| |||| ||||||| |||||| ||||||||| |||||||||    
T  13245876 aaataggattcatttaaaaattggtccttgtattccttaatcctggcattttaccctgccaaaatttaatcacttaaaattttgtccctctc 13245967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 32927269 - 32927372
Alignment:
Q  49 gtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttt-tccctcccaaaatataatcatttaaaatttgg 147  Q
    |||||||| | ||||||||| |||||||||||||| | || |||| |||| || ||| ||||||||| || ||  |||||| |||||| |||||||||||    
T  32927269 gtgtttagaccctgtaaatatgggtcatttaaaaattagtccttgaatttattaatcctgacattttgtcgct-acaaaatttaatcagttaaaatttgg 32927367  T
Q  148 tccct 152  Q
    |||||    
T  32927368 tccct 32927372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 42267304 - 42267420
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||  | ||| |||||||||||||||||||| |||| | || |||  || ||| ||||| |||  ||| ||||||| |||||||||    
T  42267304 gcttttatatgtgtttattccctgcaaataggggtcatttaaaaattggtccctgtattctttaatcctgacaatttgtcctgccaaaatttaatcattt 42267403  T
Q  139 aaaatttggtccctctc 155  Q
    || |||| ||| |||||    
T  42267404 aatatttcgtctctctc 42267420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 20704431 - 20704547
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| ||||| | ||||||||||||||||||| |  ||| ||| ||||||||||||| |||| ||||||| |||||| ||    
T  20704431 gcttttatatgtgtttagtccctgcaaataagagtcatttaaaaaatggttcctatattccttaatcttgacattttgccctgccaaaatttaatcactt 20704530  T
Q  139 aaaatttggtccctctc 155  Q
    ||||||  |||||||||    
T  20704531 aaaattccgtccctctc 20704547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 154
Target Start/End: Complemental strand, 20704754 - 20704639
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||||| ||| |||||||| | |||||||||||||||| || ||||||| ||| ||  ||||| | || ||||||| |||||| ||    
T  20704754 gcttttatatgtgtttagcccctgcaaatagggattatttaaaaaatggttcatgtatttcttaatcctggtattttgctctgccaaaatttaatcactt 20704655  T
Q  139 aaaatttggtccctct 154  Q
    ||||||| ||||||||    
T  20704654 aaaatttcgtccctct 20704639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 154
Target Start/End: Original strand, 30380852 - 30380962
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaat 143  Q
    |||| ||||||||  |||||||||||| |||||||||||| ||||| |||  |||||| ||| ||| |||||  | |  |||||| ||||||||||||||    
T  30380852 tatatgtgtttagtttctgtaaataggagtcatttaaaaattggtttttgtttttcttaatcctgatattttgtcatgtcaaaatttaatcatttaaaat 30380951  T
Q  144 ttggtccctct 154  Q
    || ||||||||    
T  30380952 ttcgtccctct 30380962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 44654618 - 44654731
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||||||||||||||||||||||||||||| | || ||||||| ||   | ||||||| |||  |||||| |||||| ||    
T  44654618 gcttttatatgtgtttagtccctgtaaataggggtcatttaaaaaatggtccatgtatttcttaattcaggcattttttcct-gcaaaatttaatcactt 44654716  T
Q  139 aaaatttggtccctc 153  Q
    |||| ||||||||||    
T  44654717 aaaaattggtccctc 44654731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 26479347 - 26479303
Alignment:
Q  44 tatacgtgtttagcctctgtaaataggggtcatttaaaaaatggt 88  Q
    |||| |||||||| | |||||||||||||||||||||||||||||    
T  26479347 tatatgtgtttagtccctgtaaataggggtcatttaaaaaatggt 26479303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 30381149 - 30381057
Alignment:
Q  61 tgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    |||||||||| ||||||||||||||||| | || |||  || ||  || |||||| |||| ||||||| ||||||||||||| ||| ||||||    
T  30381149 tgtaaataggagtcatttaaaaaatggtccatgtattctttaattctggcattttgccctgccaaaatttaatcatttaaaaattgatccctc 30381057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 44654930 - 44654814
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| |||||||||||||||||||| | || | || ||| ||  ||| || ||||||  ||| ||||||| |||||| ||    
T  44654930 gcttttatatgtgtttagtccctgcaaataggggtcatttaaaaatttgtccatgtattcctaaatcatggcattttggcctgccaaaatttaatcactt 44654831  T
Q  139 aaaatttggtccctctc 155  Q
    ||||||| |||||||||    
T  44654830 aaaatttcgtccctctc 44654814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 26479059 - 26479120
Alignment:
Q  27 tatatatttaaagcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggt 88  Q
    |||| |||||| |||| |||| |||||||| | ||| |||||||||| ||||||||||||||    
T  26479059 tataaatttaaggcttttatatgtgtttagtccctgcaaataggggtgatttaaaaaatggt 26479120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 6525 - 6610
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtc 149  Q
    ||||||||||||||||||||||||| | || ||||||| ||| || |||||| | |||||||| | ||||| ||||||||||||||    
T  6525 aaataggggtcatttaaaaaatggtccatgtatttcttaatcctggcattttgcgctcccaaattttaatcttttaaaatttggtc 6610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 6845 - 6746
Alignment:
Q  49 gtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggt 148  Q
    |||||||| || |||||||| | || ||||||||||||||   || |||| ||  |  ||||||||| |||||||||||| |||||||||||||||||||    
T  6845 gtgtttagtctttgtaaataagagttatttaaaaaatggtctctgtatttattatttctgacattttaccctcccaaaatttaatcatttaaaatttggt 6746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 6616 - 6682
Alignment:
Q  184 ccccacttaattgcaaagtttggcgtgaagtgacaaaactatctctccttccatcagagggaagcgg 250  Q
    ||||||||||| |||||||||||||||||||||||| | || | |||||| |||||| ||| |||||    
T  6616 ccccacttaatcgcaaagtttggcgtgaagtgacaagaatacccctccttacatcagtgggcagcgg 6682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 153
Target Start/End: Original strand, 13378551 - 13378640
Alignment:
Q  64 aaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    ||||||||||||||||||||||||| |||| |||| || ||| || || ||| |||||| ||||| |||||| |||||| ||||||||||    
T  13378551 aaataggggtcatttaaaaaatggtccttgtatttgttaatcctggcaatttgccctcctaaaatttaatcacttaaaaattggtccctc 13378640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 26464598 - 26464512
Alignment:
Q  67 taggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    |||||||||||||||||||||| | || |||| || ||| || || |||||||||| ||||  |||||| |||||| ||| ||||||    
T  26464598 taggggtcatttaaaaaatggtccctgtatttgttaatcctggcaattttccctcctaaaaattaatcacttaaaaattgatccctc 26464512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 12187803 - 12187847
Alignment:
Q  107 tgacatttttccctcccaaaatataatcatttaaaatttggtccc 151  Q
    ||||||||| |||||||||||  |||||||| |||||||||||||    
T  12187803 tgacattttgccctcccaaaaattaatcattaaaaatttggtccc 12187847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 11857893 - 11858007
Alignment:
Q  39 gcttctatacgtgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatcattt 138  Q
    |||| |||| |||||||| | ||| |||||| |||||||||||||||||| | || ||| ||| ||| || |||||| | || ||||||| |||||| ||    
T  11857893 gcttttatatgtgtttagtccctgcaaatagaggtcatttaaaaaatggtccctgtattccttaatcctggcattttgctctgccaaaatttaatcactt 11857992  T
Q  139 aaaatttggtccctc 153  Q
    |||| ||||||||||    
T  11857993 aaaaattggtccctc 11858007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 14145 - 14103
Alignment:
Q  111 atttttccctcccaaaatataatcatttaaaatttggtccctc 153  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  14145 attttgccctcccaaaatttaatcatttaaaatttggtccctc 14103  T

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Target: scaffold0117 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 15866 - 15761
Alignment:
Q  50 tgtttagcctctgtaaataggggtcatttaaaaaatggttcttgcatttcttgatcttgacatttttccctcccaaaatataatca-tttaaaatttggt 148  Q
    ||||||| | ||| |||||||||||||||| ||||| |||| || |||  || |||  | ||||||||||| ||||||| |||||| |||||||||| ||    
T  15866 tgtttagtccctgcaaataggggtcatttagaaaattgttcctgtattctttaatccaggcatttttccctgccaaaatttaatcattttaaaatttcgt 15767  T
Q  149 ccctct 154  Q
    ||||||    
T  15766 ccctct 15761  T

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