View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_278 (Length: 250)
Name: NF8260A_low_278
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_278 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 48693856 - 48693630
Alignment:
| Q |
11 |
ctatgattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattga |
110 |
Q |
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| T |
48693856 |
ctatgattgatacttcttctaacacatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattga |
48693757 |
T |
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| Q |
111 |
aggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattcttttcaaga |
210 |
Q |
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| T |
48693756 |
aggaaggacttcaatttccataatatcctcaacacactctttttccataatatcttctattctatactacacaactttgtgatatcaattcttttcaaga |
48693657 |
T |
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| Q |
211 |
agtactagtccaaatttcaatatgtct |
237 |
Q |
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||||||||||||||||||||||||||| |
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| T |
48693656 |
agtactagtccaaatttcaatatgtct |
48693630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 3456967 - 3457064
Alignment:
| Q |
15 |
gattgatacttcttctaacatatcttgatcatttcctggcttttctatattgaactgctttccaacatcagctccaatatcttctggccacattgaag |
112 |
Q |
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||||| ||||||||| |||||||||||||| ||||||| |||||||| ||||| || ||||||||||||| ||||| |||||||||||||||||||| |
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| T |
3456967 |
gattgttacttcttccaacatatcttgatctcttcctggtttttctatgttgaattgttttccaacatcagttccaacatcttctggccacattgaag |
3457064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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