View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_289 (Length: 249)
Name: NF8260A_low_289
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_289 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 35993590 - 35993352
Alignment:
| Q |
11 |
cagagatacagacgtctagtataaaagtatatccatagtttatgcagaaactcttgtttgataaagctataattctttattaaaaggaaagagtaagatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993590 |
cagagatacagacgtctagtataaaaatatatccatagtttatgcagaaactcttgtttgataaagctataattctttattaaaaggaaagagtaagatt |
35993491 |
T |
|
| Q |
111 |
tgtgcaggattgctcactaataaacagtacattatagaaattctaattgctagataaagcttcagtgttttggttaacttcatcactgaaatttcaatat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993490 |
tgtgcaggattgctcactaataaacagtacattatagaaattctaattgctagataaagcttcagtgttttggttaacttcatcactgaaatttcaatat |
35993391 |
T |
|
| Q |
211 |
agtgcattcttcttatggcttcgttggacaatcttttgg |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993390 |
agtgcattcttcttatggcttcgttggacaatcttttgg |
35993352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 35998365 - 35998129
Alignment:
| Q |
11 |
cagagatacagacgtctagtataaaagtatatccatagtttatgcagaaactcttgtttgataaagctataattctttattaaaaggaaagagtaagatt |
110 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
35998365 |
cagagatgcagacatctggtataaaagtatatccatagtttatgcagaaactcttgtttgataaagctagaattctttattaaaaggaaagaataagatt |
35998266 |
T |
|
| Q |
111 |
tgtgcaggattgctcactaataaacagtacattatagaaattctaattgctagataaagcttcagtgttttggttaacttcatcactgaaatttcaatat |
210 |
Q |
| |
|
| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||| |
|
|
| T |
35998265 |
tctgcagtaatgctcactaataaatagtacattatagaaattctaattgctagataaagcttcagtgttttggttaacttcatcgat--catcacaatat |
35998168 |
T |
|
| Q |
211 |
agtgcattcttcttatggcttcgttggacaatcttttgg |
249 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35998167 |
agtgcattcttcttatggcttcattggacaatcttttgg |
35998129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University