View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_292 (Length: 249)
Name: NF8260A_low_292
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_292 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 45643244 - 45643028
Alignment:
| Q |
30 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
129 |
Q |
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| T |
45643244 |
tgacagtgttcaactatgtagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtacagacag |
45643148 |
T |
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| Q |
130 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaag |
229 |
Q |
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| T |
45643147 |
tagcggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaag |
45643048 |
T |
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| Q |
230 |
gttaagccttcttctgctgc |
249 |
Q |
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|||||||||||||||||||| |
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| T |
45643047 |
gttaagccttcttctgctgc |
45643028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 45703077 - 45703282
Alignment:
| Q |
30 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| | |
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| T |
45703077 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactagaaattcaattagtacagacgg |
45703176 |
T |
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| Q |
130 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgtt |
226 |
Q |
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| T |
45703177 |
tagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgtt |
45703276 |
T |
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| Q |
227 |
aaggtt |
232 |
Q |
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|||||| |
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| T |
45703277 |
aaggtt |
45703282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 45650508 - 45650297
Alignment:
| Q |
30 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
129 |
Q |
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||||||| |||||||||| ||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45650508 |
tgacagtattcaactatggagctggg---cacacagtggatgaagttaaagaaagtgactataaatcatgcacaactggaaattcaattagtactgacag |
45650412 |
T |
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| Q |
130 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcacatttggcatgaaactctttgttaag |
229 |
Q |
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||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | |||||| |
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| T |
45650411 |
cagtggtcccacaaccattcccctcaagaaagcaggaacacattacttcatatgtgctgttcctggacattgcacaggtggcatgaaactttctgttaaa |
45650312 |
T |
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| Q |
230 |
gttaagccttcttct |
244 |
Q |
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|||||| |||||||| |
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| T |
45650311 |
gttaaggcttcttct |
45650297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 45886889 - 45887094
Alignment:
| Q |
30 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacag |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||| |||||||||||||||| ||| | |
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| T |
45886889 |
tgacagtgttcaactatgaagctgggtggcacacagtggatgaagttaatgaaagtgactataattcatgcacaactagaaattcaattagtacagacgg |
45886988 |
T |
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| Q |
130 |
cagtggtgccacaaccattcccctcaaagaagcgggaacacattacttcatatgtgctattcctggacattgcaca---tttggcatgaaactctttgtt |
226 |
Q |
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||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||| | |||||||||||||| |||| |
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| T |
45886989 |
tagtggtgccacaaccattcccctcaaaaaagcaggaactcattacttcatatgtgctgttcctgtacattgcataagtggtggcatgaaactctctgtt |
45887088 |
T |
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| Q |
227 |
aaggtt |
232 |
Q |
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|||||| |
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| T |
45887089 |
aaggtt |
45887094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 30054843 - 30054756
Alignment:
| Q |
57 |
ggcacacagtggatgaagttagggaaagtgactatcaatcatgcacaactggaaattcaattagtactgacagcagtggtgccacaac |
144 |
Q |
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|||||||||||||| |||||| |||||||||||| ||||||||| ||| |||||||||||||||| ||||| || ||||||||||| |
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| T |
30054843 |
ggcacacagtggattaagttaaagaaagtgactataaatcatgcataaccagaaattcaattagtacagacagtagcggtgccacaac |
30054756 |
T |
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