View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_3 (Length: 668)
Name: NF8260A_low_3
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 320 - 621
Target Start/End: Complemental strand, 21558720 - 21558416
Alignment:
| Q |
320 |
tgcagctactacctggagcatgtttaatttcaaatgacaccacaaaagatgagtgtcataaagagcatag---actatggtacacaagggggtgtcctag |
416 |
Q |
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| T |
21558720 |
tgcagctattacctggggcatgtctaatatcgaatgacacaacagaagatcaatgccaaaaagagcaaagtcgacaatggtacacaagaggatgtccaag |
21558621 |
T |
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| Q |
417 |
taaatatggatggcttgcaataataggtcttgcactttatatcatannnnnnncacctgggatgggaactgtgccatgggtggttaactctgagatttac |
516 |
Q |
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| T |
21558620 |
caaaaatggttggctagcactaatcggtctttcactatacatcctattcttctcaccaggaatgggaacagttccatgggttgtaaactctgaaatatat |
21558521 |
T |
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| Q |
517 |
cctttaagatatagaggaatatgtggaggaatggcatccacatccaattgggtctcaaatcttattgttgctcaatcctttctatcattgacagaagcta |
616 |
Q |
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| T |
21558520 |
ccattaagatacagaggaatatgtggaggaatcgcgtcaacatcaaattggatttcaaatctcattgttgcacaatcttttctatcattgactgatgcta |
21558421 |
T |
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| Q |
617 |
ttgga |
621 |
Q |
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| T |
21558420 |
ttgga |
21558416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 472 - 554
Target Start/End: Complemental strand, 21492005 - 21491923
Alignment:
| Q |
472 |
cctgggatgggaactgtgccatgggtggttaactctgagatttaccctttaagatatagaggaatatgtggaggaatggcatc |
554 |
Q |
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| T |
21492005 |
cctggaatgggaacagttccatgggttgttaactctgaaatctatccattgaggtatagaggaatatgtggaggaatagcatc |
21491923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 34899975 - 34899908
Alignment:
| Q |
20 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttc |
87 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagttc |
34899908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 470 - 635
Target Start/End: Original strand, 33116791 - 33116956
Alignment:
| Q |
470 |
cacctgggatgggaactgtgccatgggtggttaactctgagatttaccctttaagatatagaggaatatgtggaggaatggcatccacatccaattgggt |
569 |
Q |
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| T |
33116791 |
cacctggaatggggactgttccatgggtcataaactctgagatttaccctttaaggtatagaggagtctgtggaggaatggcttcaacaagtgtttggat |
33116890 |
T |
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| Q |
570 |
ctcaaatcttattgttgctcaatcctttctatcattgacagaagctattggagtttcatggacatt |
635 |
Q |
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| T |
33116891 |
ctcaaaccttattgtttctcaatcctttttatctctcacacaagctattggagttgcatggacatt |
33116956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 602
Target Start/End: Original strand, 33120011 - 33120135
Alignment:
| Q |
478 |
atgggaactgtgccatgggtggttaactctgagatttaccctttaagatatagaggaatatgtggaggaatggcatccacatccaattgggtctcaaatc |
577 |
Q |
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| T |
33120011 |
atgggaacggttccatgggttatcaactctgaaatacaccctttaaggtatagaggaatatgtggaggaatagcatcaacaacagtgtgggtctctaacc |
33120110 |
T |
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| Q |
578 |
ttattgttgctcaatcctttctatc |
602 |
Q |
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| T |
33120111 |
tcattgtttctcaatcctttttatc |
33120135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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