View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_30 (Length: 436)

Name: NF8260A_low_30
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_30
NF8260A_low_30
[»] chr5 (3 HSPs)
chr5 (7-380)||(8885231-8885607)
chr5 (316-367)||(41630115-41630166)
chr5 (303-355)||(17708068-17708120)
[»] chr8 (2 HSPs)
chr8 (301-352)||(40399973-40400024)
chr8 (299-352)||(5325525-5325578)
[»] chr7 (7 HSPs)
chr7 (301-355)||(43681005-43681059)
chr7 (301-355)||(48103689-48103743)
chr7 (302-355)||(30622965-30623018)
chr7 (316-353)||(33705553-33705590)
chr7 (319-368)||(44406858-44406907)
chr7 (331-367)||(3584226-3584262)
chr7 (319-367)||(46185176-46185224)
[»] chr4 (3 HSPs)
chr4 (301-355)||(7248328-7248382)
chr4 (297-368)||(13276117-13276188)
chr4 (303-355)||(1756969-1757021)
[»] chr3 (2 HSPs)
chr3 (299-367)||(9598429-9598497)
chr3 (316-355)||(7626476-7626515)
[»] chr2 (1 HSPs)
chr2 (301-369)||(28874553-28874621)
[»] chr6 (3 HSPs)
chr6 (316-367)||(8130462-8130513)
chr6 (300-355)||(12735258-12735313)
chr6 (302-355)||(21296751-21296804)
[»] chr1 (1 HSPs)
chr1 (306-367)||(34877668-34877729)


Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 7 - 380
Target Start/End: Complemental strand, 8885607 - 8885231
Alignment:
Q  7 gatacttcagttctttgtttcaagaattagaaagaggagaagaagatgccgaagaaccttaaaattatattcgttttaatatagatttttgtggagtgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  8885607 gatacttcagttctttgtttcaagaattagaaagaggagaagaagatgccgaagaaccctaaaattatattggttttaatataaatttttgtggagtgat 8885508  T
Q  107 atagtgattttgtggtttgagatagaaacattgtggtt-ggagtgataaagaatttgctttgatatgcaac--gttgttcatatatagaacaattttgat 203  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  8885507 aaagtgattttgtggtttgagatagaaacattgtggtttggagtgataaagaatttgctttgatatgcaatatgttgttcatatatagaacaattttgat 8885408  T
Q  204 tttataatattcaacttaatgttaacataaaaccacaatattacaggttttattttgtttactcaataacaaatgtcgtaacttacaatataattttttg 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8885407 tttataatattcaacttaatgttaacataaaaccacaatattacaggttttattttgtttactcaataacaaatgttgtaacttacaatataattttttg 8885308  T
Q  304 tcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaatcgtaaccactac 380  Q
    |||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  8885307 tcctcgtgagtataactcatttgattgggacaatgcataaaatatgcaaggtacgagattcaaattctaaccactac 8885231  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 41630166 - 41630115
Alignment:
Q  316 taactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    ||||||||||||| ||||||||| |||| ||||||||||| || ||||||||    
T  41630166 taactcaattgatagggacaatgcataatatatgcaaggttcgggattcaaa 41630115  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 17708068 - 17708120
Alignment:
Q  303 gtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||||||| | |||||||| |||||  |||||||| ||||||||||||||||    
T  17708068 gtcctcgtgagcataactcagttgatatggacaatgcataaaatatgcaaggt 17708120  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 352
Target Start/End: Original strand, 40399973 - 40400024
Alignment:
Q  301 ttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaa 352  Q
    ||||||||||||| |||||||| ||| ||||||||||| |||||||||||||    
T  40399973 ttgtcctcgtgggcataactcagttggttgggacaatgcataaaatatgcaa 40400024  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 5325578 - 5325525
Alignment:
Q  299 ttttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaa 352  Q
    ||||||||||||| || || |||| ||||||| ||||||| |||||||||||||    
T  5325578 ttttgtcctcgtgagtttagctcagttgattgagacaatgcataaaatatgcaa 5325525  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 43681059 - 43681005
Alignment:
Q  301 ttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||| ||||| || ||||||| ||||||||||||||| ||||||||||||||||    
T  43681059 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggt 43681005  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 48103743 - 48103689
Alignment:
Q  301 ttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||||||||| |  ||||||| ||| ||||||||||| ||||||||||||||||    
T  48103743 ttgtcctcgtgagcttaactcagttggttgggacaatgcataaaatatgcaaggt 48103689  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 30622965 - 30623018
Alignment:
Q  302 tgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    |||| ||||| || ||||||||||||||||||||||  |||| |||||||||||    
T  30622965 tgtcatcgtgagtttaactcaattgattgggacaatacataatatatgcaaggt 30623018  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 33705553 - 33705590
Alignment:
Q  316 taactcaattgattgggacaatggataaaatatgcaag 353  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  33705553 taactcagttgattgggacaatgcataaaatatgcaag 33705590  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 368
Target Start/End: Complemental strand, 44406907 - 44406858
Alignment:
Q  319 ctcaattgattgggacaatggataaaatatgcaaggtacgagattcaaat 368  Q
    |||| ||| ||||||||||| |||||||||||||||| |||| |||||||    
T  44406907 ctcagttggttgggacaatgcataaaatatgcaaggtccgaggttcaaat 44406858  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 367
Target Start/End: Original strand, 3584226 - 3584262
Alignment:
Q  331 ggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    |||||||| |||| |||||||||||||||||||||||    
T  3584226 ggacaatgcataatatatgcaaggtacgagattcaaa 3584262  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 46185224 - 46185176
Alignment:
Q  319 ctcaattgattgggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    |||||||| | || |||||| |||||||||||||||| |||||||||||    
T  46185224 ctcaattggtaggaacaatgcataaaatatgcaaggttcgagattcaaa 46185176  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 7248328 - 7248382
Alignment:
Q  301 ttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||| ||||| || ||||||| ||||||||||||||| ||||||||||||||||    
T  7248328 ttgtcatcgtgagtttaactcagttgattgggacaatgcataaaatatgcaaggt 7248382  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 13276117 - 13276188
Alignment:
Q  297 ttttttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaat 368  Q
    ||||||||||||||| |  ||||||||||| | ||||||||| |||| ||||||||||| || | |||||||    
T  13276117 ttttttgtcctcgtgagcttaactcaattggtagggacaatgcataatatatgcaaggtccgtgtttcaaat 13276188  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 1756969 - 1757021
Alignment:
Q  303 gtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||||||| |  ||||||| || |||||||||||| ||||||||||||||||    
T  1756969 gtcctcgtgagcttaactcagttcattgggacaatgcataaaatatgcaaggt 1757021  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Original strand, 9598429 - 9598497
Alignment:
Q  299 ttttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    ||||||||||||| |  ||  ||| ||| ||||||||||| |||||||||||||||| |||||||||||    
T  9598429 ttttgtcctcgtgagcttagttcagttggttgggacaatgtataaaatatgcaaggtccgagattcaaa 9598497  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 7626515 - 7626476
Alignment:
Q  316 taactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  7626515 taactcaattgattgagacaatgcataaaatatgcaaggt 7626476  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 28874621 - 28874553
Alignment:
Q  301 ttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaatc 369  Q
    |||||||||||||  ||||||| ||| |||||| |||| |||||||||||||||| || | ||||||||    
T  28874621 ttgtcctcgtgggcttaactcagttggttgggataatgtataaaatatgcaaggttcggggttcaaatc 28874553  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 8130513 - 8130462
Alignment:
Q  316 taactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    ||||||||| | ||| ||||||| |||||||||||||||| |||||||||||    
T  8130513 taactcaatgggttgagacaatgcataaaatatgcaaggtccgagattcaaa 8130462  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 355
Target Start/End: Complemental strand, 12735313 - 12735258
Alignment:
Q  300 tttgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    |||||||||||| |  ||||||| ||| ||||||||||| ||||||||||||||||    
T  12735313 tttgtcctcgtgagcttaactcagttggttgggacaatgcataaaatatgcaaggt 12735258  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 21296751 - 21296804
Alignment:
Q  302 tgtcctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggt 355  Q
    |||||||||| || || |||| ||| ||||||||||| ||||||||||||||||    
T  21296751 tgtcctcgtgagtttagctcagttggttgggacaatgcataaaatatgcaaggt 21296804  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 367
Target Start/End: Original strand, 34877668 - 34877729
Alignment:
Q  306 ctcgtgggtataactcaattgattgggacaatggataaaatatgcaaggtacgagattcaaa 367  Q
    |||||| || ||||||||||||| | ||||||| |||||||||||||||  |||| ||||||    
T  34877668 ctcgtgagtttaactcaattgatagagacaatgcataaaatatgcaaggcccgaggttcaaa 34877729  T

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