View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_300 (Length: 247)
Name: NF8260A_low_300
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_300 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 4124241 - 4124004
Alignment:
| Q |
10 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
109 |
Q |
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| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
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| Q |
110 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
209 |
Q |
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| T |
4124141 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
4124042 |
T |
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| Q |
210 |
aacaatctgggatagtttcacacacccagcagatgcag |
247 |
Q |
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| T |
4124041 |
aacaatctgggatagtttcacacaccctgcagatgcag |
4124004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 4153591 - 4153354
Alignment:
| Q |
10 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
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| Q |
110 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
209 |
Q |
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| T |
4153491 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagc |
4153392 |
T |
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| Q |
210 |
aacaatctgggatagtttcacacacccagcagatgcag |
247 |
Q |
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| T |
4153391 |
aacaatctgggatagtttcacacaccctgcagatgcag |
4153354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 4134783 - 4134553
Alignment:
| Q |
13 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
112 |
Q |
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| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
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| Q |
113 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
212 |
Q |
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| || || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
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| T |
4134683 |
tcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4134584 |
T |
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| Q |
213 |
aatctgggatagtttcacacacccagcagat |
243 |
Q |
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| T |
4134583 |
aatctgggatagtttcacacaccctgcagat |
4134553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 4145585 - 4145362
Alignment:
| Q |
13 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
112 |
Q |
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| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
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| Q |
113 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
212 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
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| T |
4145485 |
gcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4145386 |
T |
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| Q |
213 |
aatctgggatagtttcacacaccc |
236 |
Q |
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| T |
4145385 |
aatctgggatagtttcacacaccc |
4145362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 4163950 - 4163709
Alignment:
| Q |
10 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
109 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
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| Q |
110 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
203 |
Q |
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|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
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| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
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| Q |
204 |
tggagcaacaatctgggatagtttcacacacccagcagatgc |
245 |
Q |
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| T |
4163750 |
tagatcaacaatttgggatagtttcactcaccctgcggatgc |
4163709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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