View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_302 (Length: 247)
Name: NF8260A_low_302
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_302 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 19370106 - 19369881
Alignment:
| Q |
17 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19370106 |
attgtcaggttgatacagtaaacaattttgaagatggcagttggaaggaactacatactgtaccagcatgccttttatctcatctcacaacatgctcact |
19370007 |
T |
|
| Q |
117 |
tagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatca |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19370006 |
tagaaattactgccgcctaaactgtgagattcaatttgcaaaatatatcttgaagaactcaacagtactaaacaccatgacaattcagattgccgaatca |
19369907 |
T |
|
| Q |
217 |
gtagatacaaatacataactccaaac |
242 |
Q |
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||||||||||||||| |||||||||| |
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| T |
19369906 |
gtagatacaaatacaaaactccaaac |
19369881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 49856712 - 49856556
Alignment:
| Q |
75 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
174 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||| ||| |||||||||| || ||| |||||||||||||||||||| || |||| |
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| T |
49856712 |
tgtaccagaatgccttttatctcatcttacaacatgctcacttagaagttatagccgcataaattgcgagcttcaatttgcaaaatatatcatgcagaat |
49856613 |
T |
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| Q |
175 |
tcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaataca |
231 |
Q |
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| T |
49856612 |
tcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaataca |
49856556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 39559581 - 39559717
Alignment:
| Q |
79 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
178 |
Q |
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|||| |||||| ||||||||||||| ||||||||| |||| |||||| ||||||| ||||||||| |||||||||| |||||||| || |||| |||| |
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| T |
39559581 |
ccagaatgcctcttatctcatctcagaacatgctcgcttataaattatagccgcattaactgtgagtttcaatttgctaaatatataatgcagaattcaa |
39559680 |
T |
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| Q |
179 |
gagtactaaacaccatgacaattcagattgccgaatc |
215 |
Q |
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||||| ||| |||||||||||||||| |||| |||| |
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| T |
39559681 |
gagtattaaggaccatgacaattcagagtgccaaatc |
39559717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 231
Target Start/End: Original strand, 50815364 - 50815516
Alignment:
| Q |
79 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
178 |
Q |
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|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50815364 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50815463 |
T |
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| Q |
179 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaataca |
231 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||| |
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| T |
50815464 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaataca |
50815516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 231
Target Start/End: Complemental strand, 50860500 - 50860348
Alignment:
| Q |
79 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
178 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| ||| ||||||| | ||||| || |||||| |||||||||| || |||||| | ||| |||| |
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| T |
50860500 |
ccagaatgccttttatctcatcttacaacatgctcccttcgaaattatagtcgcatcaattgtgagtttcaatttgctaactatatcatccggaattcaa |
50860401 |
T |
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| Q |
179 |
gagtactaaacaccatgacaattcagattgccgaatcagtagatacaaataca |
231 |
Q |
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||||||||| |||||||| |||||||| ||| ||||| ||||| ||||||||| |
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| T |
50860400 |
gagtactaagcaccatgataattcagagtgcagaatccgtagagacaaataca |
50860348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 49868094 - 49867974
Alignment:
| Q |
79 |
ccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaa |
178 |
Q |
| |
|
|||| |||||||| ||||||||| ||||| |||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||| || |||| ||| |
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| T |
49868094 |
ccagaatgcctttcatctcatcttacaacttgctcacttagaaattacagccgcataaattgtgagtttccatttgcaaaatatataatgcagaattcag |
49867995 |
T |
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| Q |
179 |
gagtactaaacaccatgacaa |
199 |
Q |
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||||||| | |||||||||| |
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| T |
49867994 |
gagtactgaggaccatgacaa |
49867974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 241
Target Start/End: Complemental strand, 49973158 - 49973001
Alignment:
| Q |
84 |
atgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagta |
183 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||| || |||| | |||||| |||| |||||||||||||| ||||||| ||||||||| |
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| T |
49973158 |
atgccttttatcctatctatcaacatgctcacttagaaattattggggcatcacttgtgagcttcactttgcaaaatatattatgaagaattcaagagta |
49973059 |
T |
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| Q |
184 |
ctaaacaccatgacaattcagattgccgaatcagtagatacaaatacataactccaaa |
241 |
Q |
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|| | | |||||| |||||||| |||| ||| ||||||||| |||| | ||||||| |
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| T |
49973058 |
cttagcgccatgaaaattcagagtgccaaattcctagatacaactacaaagctccaaa |
49973001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 231
Target Start/End: Complemental strand, 49979391 - 49979306
Alignment:
| Q |
146 |
ttcaatttgcaaaatatatcttgaagaactcaagagtactaaacaccatgacaattcagattgccgaatcagtagatacaaataca |
231 |
Q |
| |
|
|||||||||| || |||||| || | || | ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||||| |
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| T |
49979391 |
ttcaatttgctaactatatcatgcataattgaagagtactaagaaccatgacaattcagggtgccaaatccgtagagacaaataca |
49979306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0543 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 2216 - 2063
Alignment:
| Q |
88 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
187 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
2216 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
2117 |
T |
|
| Q |
188 |
acaccatgacaattcagattgccgaatcagtagatacaaatacataactccaaa |
241 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| | ||||||| |
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| T |
2116 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
2063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 3762 - 3609
Alignment:
| Q |
88 |
cttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaactcaagagtactaa |
187 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| | |||||||| |||||| ||| |||||||| ||||||| || |||| |||||| || || |
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| T |
3762 |
cttttatctcatcttacaacatgctcacttagaaattacagtcgcataaattgtgagcttccatttgcaagatatatcatgcagaattcaagaatattac |
3663 |
T |
|
| Q |
188 |
acaccatgacaattcagattgccgaatcagtagatacaaatacataactccaaa |
241 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||| | ||||||| |
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|
| T |
3662 |
gcaccatgacaattcagagtgccgaattcttagatacaaatacaaagctccaaa |
3609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 31211699 - 31211807
Alignment:
| Q |
75 |
tgtaccagcatgccttttatctcatctcacaacatgctcacttagaaattactgccgcataaactgtgagattcaatttgcaaaatatatcttgaagaac |
174 |
Q |
| |
|
|||||||| || ||||||| |||||| ||||||||||||||||||| | |||||||||||||| |||| ||||||||||||||| || ||||| |
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| T |
31211699 |
tgtaccagattgtcttttatatcatcttacaacatgctcacttagaagcataagaagcataaactgtgagcttcagtttgcaaaatatatcatgcagaac |
31211798 |
T |
|
| Q |
175 |
tcaagagta |
183 |
Q |
| |
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||| ||||| |
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| T |
31211799 |
tcaggagta |
31211807 |
T |
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