View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_303 (Length: 247)

Name: NF8260A_low_303
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_303
NF8260A_low_303
[»] chr4 (4 HSPs)
chr4 (134-175)||(45088872-45088913)
chr4 (194-244)||(44668633-44668683)
chr4 (194-244)||(44687909-44687959)
chr4 (215-244)||(45095432-45095461)
[»] chr1 (4 HSPs)
chr1 (211-244)||(43986172-43986205)
chr1 (213-244)||(43983365-43983396)
chr1 (197-244)||(44004750-44004797)
chr1 (206-244)||(19567332-19567370)
[»] chr7 (1 HSPs)
chr7 (211-244)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (198-243)||(24002368-24002413)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 45088872 - 45088913
Alignment:
Q  134 tctcagcagaaggacaccgttttctgaaatgaacaaggcatc 175  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  45088872 tctcagcagaagaacaccgttttcagaaatgaacaaggcatc 45088913  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 44668633 - 44668683
Alignment:
Q  194 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 244  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44668633 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44668683  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 44687909 - 44687959
Alignment:
Q  194 atcctgagggaagattgtcaatttagtccatgactcaacaactccatactc 244  Q
    |||||| |||| |||  ||| ||||||||||||||||||||||||||||||    
T  44687909 atcctgtgggatgatcatcagtttagtccatgactcaacaactccatactc 44687959  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 244
Target Start/End: Original strand, 45095432 - 45095461
Alignment:
Q  215 tttagtccatgactcaacaactccatactc 244  Q
    ||||||||||||||||||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactc 45095461  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 43986172 - 43986205
Alignment:
Q  211 tcaatttagtccatgactcaacaactccatactc 244  Q
    ||||||||||||||||||||||||||||||||||    
T  43986172 tcaatttagtccatgactcaacaactccatactc 43986205  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 43983365 - 43983396
Alignment:
Q  213 aatttagtccatgactcaacaactccatactc 244  Q
    ||||||||||||||||||||||||||||||||    
T  43983365 aatttagtccatgactcaacaactccatactc 43983396  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 44004750 - 44004797
Alignment:
Q  197 ctgagggaagattgtcaatttagtccatgactcaacaactccatactc 244  Q
    |||||||| |||  |||||||||||||||||||| |||||||||||||    
T  44004750 ctgagggatgatcatcaatttagtccatgactcagcaactccatactc 44004797  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 19567332 - 19567370
Alignment:
Q  206 gattgtcaatttagtccatgactcaacaactccatactc 244  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  19567332 gattgtcaatatagtccatgactcagcaactccatactc 19567370  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 41688793 - 41688826
Alignment:
Q  211 tcaatttagtccatgactcaacaactccatactc 244  Q
    ||||||||||||||||||||||||||| ||||||    
T  41688793 tcaatttagtccatgactcaacaactctatactc 41688826  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 24002413 - 24002368
Alignment:
Q  198 tgagggaagattgtcaatttagtccatgactcaacaactccatact 243  Q
    ||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  24002413 tgagggatgattttcaattttgtccatgactcaacaactccgtact 24002368  T

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