View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_304 (Length: 247)
Name: NF8260A_low_304
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_304 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: scaffold0432 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4267 - 4029
Alignment:
| Q |
1 |
gtttttaatggtttaaattacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcat--gctactgatgcattgagg |
98 |
Q |
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| T |
4267 |
gtttttaatggtttaaattacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcatatgctacttatacattgcgg |
4168 |
T |
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| Q |
99 |
gaatatattacggatccactacgcgaaattattaggtgtggtactgtcatataatctcatagatttgaattcatctccatttatcaaatttcttttacat |
198 |
Q |
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| T |
4167 |
gaatatattacggatccactacatgaaattattaggtgtggtacagtcatatattctcataaatttgaactcatctccatttatcaaatttcttttacgt |
4068 |
T |
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| Q |
199 |
tctaaattgcggtgnnnnnnnnatttggcatctgttaac |
237 |
Q |
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| T |
4067 |
tataaattgcggtgttttttttatttggcatctgttaac |
4029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 52684805 - 52685016
Alignment:
| Q |
1 |
gtttttaatggtttaaattacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcatgctactgatgcattgaggga |
100 |
Q |
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| T |
52684805 |
gtttttaatagtttaagttacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcatgctacttatacattgaggga |
52684904 |
T |
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| Q |
101 |
atatattacggatccactacgcgaaattattaggtgtggtactgtcatataatctcatagatttgaattcatctccatttatcaaatttcttttacattc |
200 |
Q |
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| T |
52684905 |
atatattacggatccgctccacaaaattattaggtgtggtactgtcatatattctcataagtttgaactcatctccatttatcaaatttcttttacattc |
52685004 |
T |
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| Q |
201 |
taaattgcggtg |
212 |
Q |
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| T |
52685005 |
taaactgcggtg |
52685016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 5000061 - 5000264
Alignment:
| Q |
1 |
gtttttaatggtttaaattacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcatgctactgatgcattgaggga |
100 |
Q |
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| T |
5000061 |
gtttttaatagtttaaattacatcttaatttggaattcacaattacaagtgaagatagaatgagtttcaaataatttcatgctacttatacattgaggga |
5000160 |
T |
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| Q |
101 |
atatattacggatccactacgcgaaattattaggtgtggtactgtcatataatctcatagatttgaattcatctccatttatcaaatttcttttacattc |
200 |
Q |
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| T |
5000161 |
atatattacgaatccgctccacaaaattattaggtgtggtactgtcatatattctcataagtttgaactcatctccatttatcaaatttcttttacattc |
5000260 |
T |
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| Q |
201 |
taaa |
204 |
Q |
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|||| |
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| T |
5000261 |
taaa |
5000264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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