View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_305 (Length: 246)
Name: NF8260A_low_305
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_305 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 25633365 - 25633601
Alignment:
| Q |
13 |
aatattaggaaaccagaaaaatgtatggaaaagtattattctcattaatgaagt--atctgttacagcaagtatatatagacatatgtttgtgtacatta |
110 |
Q |
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| T |
25633365 |
aatattaggaaaccagaaaaatgaatggagaagtattattctcattgatgaagtgtatctgttacagcaagtatatatagacatatgtttgtgtacatta |
25633464 |
T |
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| Q |
111 |
attaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgcaagtaatgattaacaa-taatgttaccgacttctttatct |
209 |
Q |
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| T |
25633465 |
attaagctatcatatactatagtgtagctaagtactcttagatctagttgcttaggctgcaagtaatgattaacaactaatgttaccgacttctttatct |
25633564 |
T |
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| Q |
210 |
ttatcatctaataatatattctggatctaattaattg |
246 |
Q |
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| T |
25633565 |
ttatcatctaataatatattctggatataattaattg |
25633601 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 28669485 - 28669586
Alignment:
| Q |
72 |
ttacagcaagtatatatagaca-tatgtttgtgtacattaattaagctatcatatgctatagtgtagctaagcactcttagatctagttgcttaggctgc |
170 |
Q |
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| T |
28669485 |
ttacagcaagtatatatagacagaatgcttgtctac----attaagctatcatgtgttatagtgtagctaattactctgcga-ctagttgcttagactgc |
28669579 |
T |
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| Q |
171 |
aagtaat |
177 |
Q |
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| T |
28669580 |
aagtaat |
28669586 |
T |
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