View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_309 (Length: 246)

Name: NF8260A_low_309
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_309
NF8260A_low_309
[»] chr1 (4 HSPs)
chr1 (70-246)||(34323544-34323734)
chr1 (70-165)||(34311070-34311165)
chr1 (193-246)||(34311412-34311465)
chr1 (169-198)||(34311184-34311213)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 246
Target Start/End: Complemental strand, 34323734 - 34323544
Alignment:
Q  70 ttttattaacctatttaaacataaattttgaaataaaagaatttcatatgaaacatttaaacatcttaaaacttcaatttttcaattattttaaaaagg- 168  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| | || ||||||| ||||||||||||||||||||||||||||||||||||     
T  34323734 ttttattaacctatttaaacataaattttgaaacaaaagaaattcatattatacgtttaaacttcttaaaacttcaatttttcaattattttaaaaaggt 34323635  T
Q  169 -------------tggcacttggcagaaccatgtttgttataacacacgaagcctctggaagagcttggagaattcttgcacttagaacca 246  Q
                 |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34323634 taatgtctatatatggcacttggcagaaccacgtttgttataacacacgaagtctctggaagagcttggagaattcttgcacttagaacca 34323544  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 70 - 165
Target Start/End: Original strand, 34311070 - 34311165
Alignment:
Q  70 ttttattaacctatttaaacataaattttgaaataaaagaatttcatatgaaacatttaaacatcttaaaacttcaatttttcaattattttaaaa 165  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||  |||||||||| |||||||||    
T  34311070 ttttattaacctatttaaacataaatttagaaataaaagaaattcatatgaaacatttaaacttcttaaaatttatatttttcaataattttaaaa 34311165  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 34311412 - 34311465
Alignment:
Q  193 ttataacacacgaagcctctggaagagcttggagaattcttgcacttagaacca 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34311412 ttataacacacgaagcctctggaagagcttggagaattcttgcacttagaacca 34311465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 34311184 - 34311213
Alignment:
Q  169 tggcacttggcagaaccatgtttgttataa 198  Q
    ||||||||||||||||||||||||||||||    
T  34311184 tggcacttggcagaaccatgtttgttataa 34311213  T

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