View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_321 (Length: 245)
Name: NF8260A_low_321
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_321 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 43703074 - 43703303
Alignment:
| Q |
16 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctcttggagcaaaataaaacatactttatttcactacaaagtt |
115 |
Q |
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| T |
43703074 |
acatcaacagttacacttatgcagagaaatttacaccaaagtttcatgttagacttgctttttgagcaaaataaaacatactttatttcactacaaagtt |
43703173 |
T |
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| Q |
116 |
taaacttggttttattcacattacttttatcaccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtatagcattcaaaattt |
215 |
Q |
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| T |
43703174 |
taaactttgttttattcacattacttttatcgccaacatgagttggtccgacttgaaggggctcggatcccttgagcaagaggtataggattcaaaattt |
43703273 |
T |
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| Q |
216 |
agtttttgtgaatcaagcaaattctgttgg |
245 |
Q |
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| T |
43703274 |
agtttttgtgaatcaagcaaattctgttgg |
43703303 |
T |
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