View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_322 (Length: 245)
Name: NF8260A_low_322
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_322 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 12123785 - 12123979
Alignment:
| Q |
30 |
ttttctttggtaagttcaaaaggatcaatcaaattggtaaatgaagagctttcnnnnnnnnnncattatcgttctnnnnnnnnntaaactatttgtattc |
129 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||| ||| |||||| ||||| |
|
|
| T |
12123785 |
ttttctttagtaagttcaaaaggatcaatcaaattgataaatgaagagcttacttttttttttcattatctttctaaaaaaaaataa-ctatttctattc |
12123883 |
T |
|
| Q |
130 |
tcaacctcttaactaaattttggtagtttaaaataactagtaaaaagaaagacttaagatattattttatggagaggtctccatcctttttcttgt |
225 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12123884 |
tcaacctcttacctaaattttggtagtttaaaataactagtaaaacgaaagacttaagatattattttatggagaggtctccatcctttttcttgt |
12123979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University