View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_327 (Length: 244)
Name: NF8260A_low_327
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_327 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 244
Target Start/End: Original strand, 5394217 - 5394441
Alignment:
| Q |
20 |
agtacctggttggcgcggccggtatacttgagttgacaagagtcgaagccagggcgacggcggaagaggttgtgaatctcacgcgctttcacgtcgtctg |
119 |
Q |
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| T |
5394217 |
agtacctggttggcgcggccggtatacttgagttgacaagagtcgaagccagggcgacggcggaagaggttgtgaatctcacgcgctttcacgtcgtctg |
5394316 |
T |
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| Q |
120 |
ggagaccggagacgaagagtgtgttgatgttgctccgttcgtcttgttggtaatggtaatactgatcaaattgttgcatagccattccgagggttgcgcc |
219 |
Q |
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| T |
5394317 |
ggagaccggagacgaagagtgtgttgatgttgctccgttcgtcttgttggtagtggtaatactgatcaaattgttgcatagccattccgagggttgcgct |
5394416 |
T |
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| Q |
220 |
ggtgaagatgaaagggtgaggtaag |
244 |
Q |
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| T |
5394417 |
ggtgaagatgaaagggtgaggtaag |
5394441 |
T |
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