View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_333 (Length: 242)

Name: NF8260A_low_333
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_333
NF8260A_low_333
[»] chr7 (20 HSPs)
chr7 (14-212)||(2455202-2455400)
chr7 (30-208)||(2505716-2505897)
chr7 (28-199)||(10414331-10414504)
chr7 (28-139)||(8038890-8039004)
chr7 (25-153)||(2506908-2507039)
chr7 (30-151)||(5046936-5047057)
chr7 (28-122)||(10991093-10991190)
chr7 (35-152)||(21502732-21502852)
chr7 (34-208)||(17887773-17887949)
chr7 (30-148)||(20175967-20176087)
chr7 (33-212)||(21228336-21228518)
chr7 (28-142)||(24751309-24751423)
chr7 (85-152)||(8317540-8317607)
chr7 (14-201)||(13281778-13281967)
chr7 (39-148)||(5236969-5237081)
chr7 (30-77)||(1732544-1732591)
chr7 (30-148)||(10332277-10332398)
chr7 (28-77)||(1254872-1254921)
chr7 (75-152)||(3585621-3585698)
chr7 (35-71)||(5471913-5471949)
[»] chr5 (11 HSPs)
chr5 (30-208)||(28280155-28280336)
chr5 (82-176)||(20532597-20532691)
chr5 (24-109)||(17336468-17336555)
chr5 (109-207)||(21089451-21089550)
chr5 (27-207)||(32415874-32416057)
chr5 (34-77)||(15520852-15520895)
chr5 (30-152)||(18832095-18832220)
chr5 (39-152)||(19003864-19003980)
chr5 (30-148)||(28254764-28254885)
chr5 (30-73)||(31600256-31600299)
chr5 (33-77)||(24807369-24807413)
[»] chr4 (21 HSPs)
chr4 (14-207)||(20316216-20316410)
chr4 (28-208)||(19547091-19547277)
chr4 (28-153)||(25117964-25118093)
chr4 (34-207)||(22217039-22217213)
chr4 (30-142)||(7613609-7613723)
chr4 (55-207)||(11240995-11241150)
chr4 (30-206)||(17661823-17662006)
chr4 (28-154)||(10108118-10108247)
chr4 (39-152)||(11252228-11252343)
chr4 (30-143)||(1832162-1832277)
chr4 (27-142)||(19335320-19335437)
chr4 (14-133)||(10089536-10089656)
chr4 (39-152)||(17711188-17711304)
chr4 (113-146)||(19538989-19539022)
chr4 (30-187)||(20828204-20828363)
chr4 (30-132)||(22345951-22346054)
chr4 (113-148)||(19667052-19667087)
chr4 (33-128)||(9849833-9849928)
chr4 (35-143)||(14573327-14573438)
chr4 (103-152)||(17024789-17024839)
chr4 (111-152)||(23970762-23970805)
[»] chr1 (14 HSPs)
chr1 (32-206)||(27911940-27912115)
chr1 (28-154)||(26581444-26581573)
chr1 (24-142)||(17016942-17017062)
chr1 (39-208)||(20033161-20033332)
chr1 (39-152)||(15542407-15542523)
chr1 (30-148)||(14235387-14235508)
chr1 (30-138)||(12262211-12262321)
chr1 (38-148)||(27116326-27116438)
chr1 (103-153)||(21448755-21448806)
chr1 (102-208)||(21536949-21537056)
chr1 (34-77)||(31260803-31260846)
chr1 (39-152)||(26022277-26022393)
chr1 (79-152)||(15631022-15631095)
chr1 (39-126)||(22507501-22507589)
[»] chr3 (16 HSPs)
chr3 (30-142)||(3002930-3003043)
chr3 (28-199)||(26092775-26092950)
chr3 (102-208)||(4838860-4838963)
chr3 (102-208)||(25530774-25530881)
chr3 (35-152)||(31284002-31284123)
chr3 (33-142)||(18466807-18466917)
chr3 (39-142)||(27073834-27073940)
chr3 (103-208)||(51118524-51118631)
chr3 (43-177)||(14977692-14977828)
chr3 (40-152)||(8765557-8765672)
chr3 (30-77)||(7208395-7208442)
chr3 (80-152)||(13906682-13906754)
chr3 (40-142)||(16242302-16242405)
chr3 (30-77)||(20886742-20886789)
chr3 (39-152)||(8145130-8145246)
chr3 (103-152)||(18747754-18747804)
[»] chr2 (17 HSPs)
chr2 (28-127)||(27871156-27871257)
chr2 (28-147)||(34369198-34369320)
chr2 (30-206)||(25938402-25938584)
chr2 (30-152)||(32141490-32141615)
chr2 (39-152)||(25537438-25537554)
chr2 (39-152)||(27907621-27907737)
chr2 (28-154)||(30682300-30682428)
chr2 (28-142)||(32438790-32438906)
chr2 (30-77)||(8445650-8445697)
chr2 (30-152)||(29717457-29717579)
chr2 (80-152)||(25886290-25886362)
chr2 (33-152)||(28930150-28930272)
chr2 (114-208)||(42153593-42153688)
chr2 (85-152)||(18758232-18758299)
chr2 (39-152)||(17350860-17350976)
chr2 (39-152)||(25196493-25196609)
chr2 (30-152)||(27420945-27421069)
[»] chr6 (18 HSPs)
chr6 (102-207)||(34395402-34395507)
chr6 (28-154)||(21546866-21546993)
chr6 (30-152)||(30356136-30356261)
chr6 (40-146)||(32759852-32759961)
chr6 (37-152)||(22564648-22564766)
chr6 (38-195)||(27961095-27961254)
chr6 (30-153)||(10822110-10822235)
chr6 (30-147)||(21079825-21079944)
chr6 (102-154)||(9387505-9387558)
chr6 (39-150)||(14723567-14723680)
chr6 (39-152)||(23005345-23005461)
chr6 (39-152)||(23782905-23783021)
chr6 (30-152)||(9507369-9507494)
chr6 (31-77)||(20404187-20404233)
chr6 (33-146)||(8038155-8038271)
chr6 (30-148)||(9339081-9339201)
chr6 (39-152)||(18171352-18171467)
chr6 (41-152)||(11136800-11136916)
[»] chr8 (14 HSPs)
chr8 (35-152)||(28904066-28904186)
chr8 (28-142)||(17649673-17649789)
chr8 (30-152)||(35861561-35861685)
chr8 (39-145)||(30832821-30832930)
chr8 (39-152)||(15176531-15176646)
chr8 (35-145)||(24851050-24851163)
chr8 (108-146)||(17976184-17976222)
chr8 (108-153)||(15557341-15557388)
chr8 (35-151)||(24381426-24381545)
chr8 (39-152)||(24090977-24091092)
chr8 (30-148)||(17980666-17980787)
chr8 (34-148)||(19784883-19785000)
chr8 (103-152)||(17510854-17510902)
chr8 (111-154)||(18836748-18836792)
[»] scaffold0072 (1 HSPs)
scaffold0072 (30-146)||(38164-38283)
[»] scaffold0085 (1 HSPs)
scaffold0085 (27-143)||(23872-23991)
[»] scaffold0086 (2 HSPs)
scaffold0086 (30-152)||(11966-12090)
scaffold0086 (35-148)||(12896-13012)
[»] scaffold0059 (1 HSPs)
scaffold0059 (103-208)||(63991-64097)
[»] scaffold0005 (1 HSPs)
scaffold0005 (35-143)||(243938-244049)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 2455202 - 2455400
Alignment:
Q  14 ttcacaaatatttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaacacctagaattgctttgtttcgcgaaaaactagaat 113  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2455202 ttcacaaatatttagaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaacacctagaattgctttgtttcgcgaaaaactagaat 2455301  T
Q  114 tacatgactcaaatagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatgtttg 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2455302 tacatgactcaaatagaaaacattacaaatgtcccaaaaactatgggaaattgttataatactcatttattttggattaaaactaaataaaaatgtttg 2455400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 2505716 - 2505897
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc--tagaattgctttgtttcgcgaaaaactagaattacatgactcaaa 126  Q
    ||||||| ||||| |||||||| |||||||||||| ||||||||| |||||||  || ||||||| ||||||| | ||||||||||||||||||||| ||    
T  2505716 atgtttttctttgacgatttgcatgatttcttcttgaattacatcaaaacacccttaaaattgctatgtttcg-ggaaaactagaattacatgactcgaa 2505814  T
Q  127 tagaaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatg 208  Q
     |||||||||| | |||||| |||||||| |  |  ||||||| ||| |||| | ||||||||||  ||||||||||||||||    
T  2505815 aagaaaacattgcaaaatgttccgaaaaccatagacaattgttctaaaactcctctattttggatcgaaactaaataaaaatg 2505897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 10414504 - 10414331
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cac-ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||||| |||| |||||||| |||||||||||| ||||| |||||| ||| ||||||||||| | |||   | ||||||| ||||||| |||||||    
T  10414504 aaatgttttgttttgtcgatttgcatgatttcttcttgaattatatcaaaacactctagaattgctatttttttaggaaaactataattacacgactcaa 10414405  T
Q  126 -atagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaa 199  Q
     ||||||| |||||||||||||||||||||||  |||| || || |||||||| |||||| | ||| ||||||||    
T  10414404 catagaaa-cattacaaatgtcccgaaaactataggaatttcttctaatactcctttattcttgatgaaaactaa 10414331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 139
Target Start/End: Original strand, 8038890 - 8039004
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||||| |||| |||||||  ||||||||| || |||||||||||| |||| |||||||||| ||||||  |||||||||||||||||||| ||||    
T  8038890 aaatgttttgttttgtcgatttggatgatttctttttgaattacatcaaaacaccctagaattgctatgtttcaggaaaaactagaattacatgaatcaa 8038989  T
Q  126 -atagaaaacattac 139  Q
     ||||||||||||||    
T  8038990 tatagaaaacattac 8039004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 2507039 - 2506908
Alignment:
Q  25 ttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgact 122  Q
    |||| |||| ||||||||| ||||||| |||||||||| | ||||| |||||| |||| || |||| || ||||| | ||| || |||||||||||||||    
T  2507039 ttaagatgtcttgctttgctgatttgcatgatttcttcgtgaattagatcaaaacaccctaaaatttctatgttttgggaataa-tagaattacatgact 2506941  T
Q  123 caaata--gaaaacattacaaatgtcccgaaaa 153  Q
    ||||||  |||||||||||||||||| ||||||    
T  2506940 caaatatagaaaacattacaaatgtctcgaaaa 2506908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 5047057 - 5046936
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacac-ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||| ||||||||||||| |||||||||| | ||||||||| |||||| ||| ||||||| ||||||| ||| ||    |||||||| ||||||      
T  5047057 atgtcttgatttgccgatttgcatgatttcttcgtgaattacatcaaaacactctaaaattgctatgtttcgggaagaa----aattacataactcaaat 5046962  T
Q  126 atagaaaacattacaaatgtcccgaa 151  Q
    ||||||||||||||||||||||||||    
T  5046961 atagaaaacattacaaatgtcccgaa 5046936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 10991190 - 10991093
Alignment:
Q  28 aaatgttttgctttgccgatttgcgt-gatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgact 122  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||| ||||| |||||||||  | | ||| | ||||||||||||||||||||||    
T  10991190 aaatgttttgctttgccgatttgcaaagatttcttcttaaattacatcaaaacaccctagaatttatatcttttgggaaaaactagaattacatgact 10991093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 21502732 - 21502852
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat--ag 129  Q
    |||||||| |||||||| |||||||||| | |||||| ||||| ||   ||||||||||| ||||||| ||| || |||||||||| ||||||| |  ||    
T  21502732 ttgctttgtcgatttgcatgatttcttcgtgaattacctcaaaaacaccctagaattgctatgtttcgggaagaa-tagaattaca-gactcaagtctag 21502829  T
Q  130 aaaacattacaaatgtcccgaaa 152  Q
    |||||||||||||||||||||||    
T  21502830 aaaacattacaaatgtcccgaaa 21502852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 17887949 - 17887773
Alignment:
Q  34 tttgctttgccgatttgcgtgatttcttcttaaattacatc--aaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaataga 130  Q
    |||||||| ||||||||| || ||||||||| |||||||||  ||||||| |||||||||||  |||   |||||| || ||||||||||||||||  ||    
T  17887949 tttgcttttccgatttgcatgttttcttcttgaattacatcaaaaacaccatagaattgcttgattt--tgaaaaagtacaattacatgactcaaaatga 17887852  T
Q  131 aaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatg 208  Q
    ||||||||| ||||||||| ||||| |  || ||||  | ||| |||| | ||| |||||| |||||||| ||||||||    
T  17887851 aaacattacaaaatgtccctaaaaccataggcaatttctctaaaactcctctatcttggatcaaaactaactaaaaatg 17887773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 20175967 - 20176087
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||| |||||||||||||||||   |||||||| | ||||||||| ||||| |||||||||||| ||||||| | |||| ||||||||||||| | ||||    
T  20175967 atgtcttgctttgccgatttgcaaaatttcttcatgaattacatcaaaacaccctagaattgctgtgtttcg-ggaaaattagaattacatgaataaaat 20176065  T
Q  128 aga-aaacattacaaatgtccc 148  Q
    | | ||| ||||||||||||||    
T  20176066 atagaaaaattacaaatgtccc 20176087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 212
Target Start/End: Original strand, 21228336 - 21228518
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaaatag 129  Q
    ||||| ||||||| ||||| |||||| | ||| |||||||||||| ||   |||||| ||||| |||||| ||||| ||| |||||||||| || ||  |    
T  21228336 ttttgttttgccgttttgcatgatttttccttgaattacatcaaaaacaccctagaactgcttcgtttcgagaaaa-ctataattacatgattcgaaatg 21228434  T
Q  130 aaaacattacaaa-tgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatgtttg 212  Q
    ||||||||| ||| |||||| ||||| |  || ||||| | ||| |||| | ||  |||||| |||||||||||||||||||||    
T  21228435 aaaacattaaaaaatgtcccaaaaaccataggcaattgctctaaaactcctgtaacttggatcaaaactaaataaaaatgtttg 21228518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 24751423 - 24751309
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    ||||||||||||||| |||||||| || ||||||| | ||||||||| ||||| |||||||||| | | |||   | |||| ||||||||||||||||||    
T  24751423 aaatgttttgctttgtcgatttgcatggtttcttcgtgaattacatcaaaacaccctagaattgatgttttt---ggaaaaatagaattacatgactcaa 24751327  T
Q  126 -atagaaaacattacaaa 142  Q
     |||||||| ||||||||    
T  24751326 tatagaaaagattacaaa 24751309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 8317607 - 8317540
Alignment:
Q  85 aattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||  |||||||||||||| |||||||||    
T  8317607 aattgctatgtttcg-gaaaaactagaattaca-gactcaaatatagaaaacattacaaaagtcccgaaa 8317540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 13281967 - 13281778
Alignment:
Q  14 ttcacaaatatttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatca-aacacc-tagaattgctttgtttcgcgaaaaactaga 111  Q
    ||||||| |||| || |||||||||||||| ||||||| |||| ||||||| |||||| | | |||||| |||||||||| |||||   |  |||||| |    
T  13281967 ttcacaagtattcaagatgttttgctttgctgatttgcatgatatcttcttgaattacgtgagaacaccgtagaattgctatgtttatag-gaaactaaa 13281869  T
Q  112 attacatgactcaaatagaaaacattacaa-atgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaat 201  Q
    ||||||||| || ||||| ||| |||| ||  | |||| ||||| |  |  ||||||| |||||||| | |||||||||||||||||||||    
T  13281868 attacatgaatcgaatagtaaatattaaaagttatcccaaaaaccatagacaattgttctaatactcctctattttggattaaaactaaat 13281778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 148
Target Start/End: Complemental strand, 5237081 - 5236969
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat--agaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||||| |||| || | ||||||||||||||| |||||||||  ||||||    
T  5237081 tttgccgatttgcatgatttcttcgtgaattacttcaaaacccccctaaaattgctatgttacg-ggaaaactagaattaca-gactcaaatacagaaaa 5236984  T
Q  134 cattacaaatgtccc 148  Q
    ||||||||| |||||    
T  5236983 cattacaaaagtccc 5236969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1732544 - 1732591
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||||||||||||||||||||| ||||||  |||| ||||||||||||    
T  1732544 atgttttgctttgccgatttgcatgattttgtcttgaattacatcaaa 1732591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 10332277 - 10332398
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactc--a 124  Q
    |||| ||| ||||||||| ||| |||||||||| | |||||||||||| |   |||||||||| | ||||||| |||||| ||||| |||| | |||  |    
T  10332277 atgtcttgttttgccgatatgcatgatttcttcatgaattacatcaaaaacatcctagaattgatatgtttcgggaaaaa-tagaactaca-ggctcgaa 10332374  T
Q  125 aatagaaaacattacaaatgtccc 148  Q
     |||||||||||||||||||||||    
T  10332375 tatagaaaacattacaaatgtccc 10332398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 1254921 - 1254872
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||||| |||||||| |||||||| |||||||||| | ||||||||||||    
T  1254921 aaatgtcttgctttgtcgatttgcttgatttcttcgtgaattacatcaaa 1254872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 3585698 - 3585621
Alignment:
Q  75 aaacacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaacattacaaatgtcccgaaa 152  Q
    |||| |||| ||||||| ||||||| ||||||||||||||||| |||||||  ||||||||||||| ||| ||| |||||    
T  3585698 aaacccctaaaattgctatgtttcg-gaaaaactagaattaca-gactcaaatatagaaaacattataaaagtcacgaaa 3585621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 5471949 - 5471913
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattac 71  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  5471949 ttgctttgccgatttgcatgatttcttcttgaattac 5471913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 28280155 - 28280336
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacac-ctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||| | ||||||  ||||||||| |||||||| ||||||||    
T  28280155 atgtttcgctttgccgatttgcatgatttcttcttgaattacatcaaaacactctagaattgttatgtttctagaaaaactataattacataactcaaat 28280254  T
Q  128 agaaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatg 208  Q
    | |||||||||| ||||||||| ||||| |  |  ||||||| |||||||| | ||||||||||||||||||||||||||||    
T  28280255 ataaaacattacaaaatgtcccaaaaaccatagacaattgttctaatactcctctattttggattaaaactaaataaaaatg 28280336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 20532691 - 20532597
Alignment:
Q  82 tagaattgctttgtttcgcgaaaaactagaattacatgactcaaatagaaaacattacaaatgtcccgaaaactacgggaaattgttataatact 176  Q
    |||||||||| ||||||   ||| ||||||||||||||||||||||||||||| ||||||||||||  ||||| |  |  |||||||||||||||    
T  20532691 tagaattgctatgtttcataaaatactagaattacatgactcaaatagaaaacgttacaaatgtcctaaaaaccatagacaattgttataatact 20532597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 17336555 - 17336468
Alignment:
Q  24 tttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaacta 109  Q
    |||||||||||||| ||||||||||||| |||||| ||||| ||||||||| ||||| |||||||||| | ||||||  |||||||||    
T  17336555 tttaaaatgttttgttttgccgatttgcatgatttattcttgaattacatcaaaacaccctagaattgatatgtttcaggaaaaacta 17336468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 21089550 - 21089451
Alignment:
Q  109 agaattacatgactcaaatagaaaacattacaa-atgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaat 207  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||| |  |  |||||||  |||| || | ||||||||||||||| |||||||||||    
T  21089550 agaattatatgactcaaatagaaaacattacaacatgtctcgaaaaccatagataattgtttcaatagtcctctattttggattaaaaataaataaaaat 21089451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 207
Target Start/End: Complemental strand, 32416057 - 32415874
Alignment:
Q  27 aaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactc 123  Q
    ||||||||||| ||||||||||||| ||||||   ||| |||||||||||| |   |||| ||||| || |||| | | ||||||||||||||||||||     
T  32416057 aaaatgttttgttttgccgatttgcatgattttgccttgaattacatcaaaaacaccctaaaattgtttcgttttgag-aaaactagaattacatgactt 32415959  T
Q  124 aaatagaaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaat 207  Q
     ||  ||||||||||| ||||||||| ||||| |  |||||||||| ||| |||| | ||  |||||| ||| || |||||||||    
T  32415958 gaaatgaaaacattacaaaatgtcccaaaaaccataggaaattgttctaaaactcctgtaacttggataaaagctgaataaaaat 32415874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 15520852 - 15520895
Alignment:
Q  34 tttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15520852 tttgctttgccgatttgcatgatttcttcttgaattacatcaaa 15520895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 18832095 - 18832220
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatca--aaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa- 125  Q
    |||| ||||||||||||||||| |||||||||| | ||||||||||  |||| |||| | ||||||| ||| | | ||||||   ||||||| ||||||     
T  18832095 atgtattgctttgccgatttgcatgatttcttcgtgaattacatcaagaacaccctatatttgcttttttttg-ggaaaactctgattacat-actcaaa 18832192  T
Q  126 -atagaaaacattacaaatgtcccgaaa 152  Q
     |||||||||||||||||||||||||||    
T  18832193 tatagaaaacattacaaatgtcccgaaa 18832220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 19003980 - 19003864
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||| | ||||||| | ||||||||||||||| |||||||  ||||||||    
T  19003980 tttgccgatttgcatgatttcttcgtgaattacttcaaaaaccccctaaaattgttatgtttcg-ggaaaactagaattaca-gactcaaatatagaaaa 19003883  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||| ||||    
T  19003882 cattacaaaagtcctgaaa 19003864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 28254764 - 28254885
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaacaccta--gaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| |||||||||| |||||| |||||||||| | |||| |||||||   |||  |||||||| ||||||| |||||  ||||||||||| ||||||      
T  28254764 atgtcttgctttgccaatttgcatgatttcttcgtgaattgcatcaaaacactaaagaattgctatgtttcgggaaaag-tagaattacattactcaaat 28254862  T
Q  126 atagaaaacattacaaatgtccc 148  Q
    |||||||| |||| |||||||||    
T  28254863 atagaaaatattataaatgtccc 28254885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 31600299 - 31600256
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacat 73  Q
    |||| ||||||||||||||||| |||||||||| ||||||||||    
T  31600299 atgtcttgctttgccgatttgcatgatttcttcgtaaattacat 31600256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 24807413 - 24807369
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||||| |||||||||||| | |||||||||| ||||||||||||    
T  24807413 ttttgcattgccgatttgcataatttcttcttgaattacatcaaa 24807369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 20316410 - 20316216
Alignment:
Q  14 ttcacaaatatttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactaga 111  Q
    ||||||||| || | ||||||||| |||||| | |||| |||||||||||| |||||||||||| |||| || |||| |  ||||| | |||||||||||    
T  20316410 ttcacaaatcttcagaatgttttgttttgccaagttgcatgatttcttcttgaattacatcaaaacaccataaaattacaatgttttg-gaaaaactaga 20316312  T
Q  112 attacatgactcaaatagaaaacattac-aaatgtcccgaaaac-tacgggaaattgttataatactcatttattttggattaaaactaaataaaaat 207  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| | ||  ||||||| || |||||||||| |||||||||||||||||||||||||||    
T  20316311 attacatgactcaaatagaaagcattacaaaatgtcccaaaatcgta--ggaaattattctaatactcatctattttggattaaaactaaataaaaat 20316216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 19547277 - 19547091
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||||  ||||||||||||| |||||||||||| ||||||||| ||||| |||||||||| ||||||||| | |||||||||||||||||||| ||    
T  19547277 aaatgttttattttgccgatttgcatgatttcttcttgaattacatcaaaacaccctagaattgttttgtttcg-ggaaaactagaattacatgacttaa 19547179  T
Q  126 -atagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactc----atttattttggattaaaactaaataaaaatg 208  Q
     |||||||||||||||| |||||| |||  ||  || ||||| | ||||||||    ||| |||||||||||||||||||| ||||||    
T  19547178 tatagaaaacattacaagtgtcccaaaagttataggcaattgctttaatactcctctattaattttggattaaaactaaatgaaaatg 19547091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 25118093 - 25117964
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||| |||||||||| |||||||| |||||||||||| ||||||||| ||||||| |||||||||| ||||||  |||||||||||||||||||||||||    
T  25118093 aaatattttgctttgtcgatttgcatgatttcttcttgaattacatcaaaacaccttagaattgctatgtttcaggaaaaactagaattacatgactcaa 25117994  T
Q  126 -atag-aaaacattacaaatgtcccgaaaa 153  Q
     |||| |||| ||||||||||||| |||||    
T  25117993 tatagaaaaaaattacaaatgtcctgaaaa 25117964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 207
Target Start/End: Complemental strand, 22217213 - 22217039
Alignment:
Q  34 tttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaatagaa 131  Q
    ||||||||  |||||||| |||| ||||||| |||||||||||| |||| ||||| || | ||||||| |||||||||||||| ||||||||||||||||    
T  22217213 tttgctttatcgatttgcatgatatcttcttgaattacatcaaaacaccctagaactgatatgtttcgggaaaaactagaatttcatgactcaaatagaa 22217114  T
Q  132 aacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaat 207  Q
    |||||   |||||||  |||| | |  || ||||||| |||| ||| ||||||||||||||||||| |||||||||    
T  22217113 aacatacaaaatgtcatgaaatc-ataggcaattgttctaatgctcctttattttggattaaaactgaataaaaat 22217039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 7613609 - 7613723
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacct-agaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||||||||||||||||||||| |||||||||||| ||| || ||||| ||||  | ||||||  ||||||| |||||||||||||||||| ||||||||    
T  7613609 atgttttgctttgccgatttgcatgatttcttcttgaatcacgtcaaaacaccccataattgccatgtttcgagaaaaactagaattacataactcaaat 7613708  T
Q  128 agaaaacattacaaa 142  Q
    |||||||||||||||    
T  7613709 agaaaacattacaaa 7613723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 11240995 - 11241150
Alignment:
Q  55 atttcttcttaaattacatcaaa-ca-cctagaattgctttgtttcgcgaaaaactagaattacatgactc-aaatagaaaacattacaaatgtcccgaa 151  Q
    |||||||||| |||||| ||||| || ||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  11240995 atttcttcttgaattacctcaaaacatcctagaatttctatgtttcgggaaaaactagaattacatgactcaaaatagaaaacattacaaatgtcccaaa 11241094  T
Q  152 aactacgggaaattgttataatactcatttattttggattaaaactaaataaaaat 207  Q
    ||  |     ||||||| |||||||| |  ||| | ||||||||||||||||||||    
T  11241095 aatcataaacaattgttctaatactcctccattctagattaaaactaaataaaaat 11241150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 17661823 - 17662006
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaa----ctagaattacatgactc 123  Q
    |||||||| | ||||||||||| |||||||||||| |||||||||||| |||| |||||||||| ||||| |  | |||    |||||||||||||||||    
T  17661823 atgttttgttatgccgatttgcatgatttcttcttgaattacatcaaaacaccctagaattgctatgttttgaaataaaaatactagaattacatgactc 17661922  T
Q  124 aaatagaaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaa 206  Q
    ||||  |||||||||  |||||||  |||||  |  ||  |||||| |||||||| ||||||||||||||||||||||||||||    
T  17661923 aaatgaaaaacattatgaaatgtcgagaaaatcataggcgattgttctaatactcctttattttggattaaaactaaataaaaa 17662006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 10108118 - 10108247
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||| | |||| |||||||| |||||||||||| ||||||||| ||||| |||| |||| || ||||||  |||||| || |||||||||| ||||    
T  10108118 aaatgtttcgttttgtcgatttgcatgatttcttcttcaattacatcaaaacaccctataattactatgtttctggaaaaattataattacatgattcaa 10108217  T
Q  126 -atagaaaacattacaaatgtcccgaaaac 154  Q
     ||||||||||||| ||||||||| |||||    
T  10108218 tatagaaaacattagaaatgtcccaaaaac 10108247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 11252343 - 11252228
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa--cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaac 134  Q
    ||||||||||||| |||||||||| | |||||| |||||  | |||| ||||||| ||||||| ||||||||||||| ||| |||||||  ||||||||     
T  11252343 tttgccgatttgcatgatttcttcgtgaattacttcaaaaccccctaaaattgctatgtttcg-gaaaaactagaatcaca-gactcaaatatagaaaat 11252246  T
Q  135 attacaaatgtcccgaaa 152  Q
    |||||||| |||||||||    
T  11252245 attacaaaagtcccgaaa 11252228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 1832277 - 1832162
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--a 126  Q
    |||| ||||||||||||||||| |||||| ||| | ||||||||| ||||||| ||||||| | ||||||| ||| || || |||||| ||||| ||  |    
T  1832277 atgtattgctttgccgatttgcatgattttttcgtgaattacatcaaaacaccaagaattgttatgtttcgggaagaa-tataattacttgacttaaata 1832179  T
Q  127 tagaaaacattacaaat 143  Q
    |||||||||||||||||    
T  1832178 tagaaaacattacaaat 1832162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 19335437 - 19335320
Alignment:
Q  27 aaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc--aaacacctag-aattgctttgtttcgcgaaaaactagaattacatgactc 123  Q
    |||||| |||||||| ||||||||| |||||||||||| |||||||||  |||||||| | |||||||  ||||   | || ||||||||||||||||||    
T  19335437 aaaatgctttgctttaccgatttgcatgatttcttcttgaattacatcaaaaacaccttgaaattgctcggttt-taggaagactagaattacatgactc 19335339  T
Q  124 aaatagaaaacattacaaa 142  Q
     ||  ||||||||||||||    
T  19335338 gaaatgaaaacattacaaa 19335320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 10089536 - 10089656
Alignment:
Q  14 ttcacaaatatttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattaca-tcaaaca-cctagaattgctttgtttcgcgaaaaactaga 111  Q
    ||||||| | || ||||||||||| ||||| || |||| |||||||||||| ||||| | | ||||| ||||||||| || ||||| | | ||| || ||    
T  10089536 ttcacaagtcttgaaaatgttttgttttgcagacttgcatgatttcttcttgaattatattaaaacaccctagaatttctatgttttgag-aaacctgga 10089634  T
Q  112 attacatgactcaaatagaaaa 133  Q
    ||||||||||||||||||||||    
T  10089635 attacatgactcaaatagaaaa 10089656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 17711188 - 17711304
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||||| ||||||| | ||||||||||||| | |||||||  ||||||||    
T  17711188 tttgccgatttgcatgatttcttcgtgaattacttcaaaacccccctaaaattgctatgtttcg-ggaaaactagaatta-aagactcaaatatagaaaa 17711285  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||| ||||| |||||||||    
T  17711286 catcacaaaagtcccgaaa 17711304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 19539022 - 19538989
Alignment:
Q  113 ttacatgactcaaatagaaaacattacaaatgtc 146  Q
    ||||||||||||||||||||||||||||||||||    
T  19539022 ttacatgactcaaatagaaaacattacaaatgtc 19538989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 20828363 - 20828204
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaa 126  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||  |   |||| ||||||| ||||||| | ||||||   |||||| ||||||||    
T  20828363 atgtcttgctttgccgatttgcatgatttcttcgtgaattacatcaagaacgccctaaaattgctatgtttcg-ggaaaactctcattaca-gactcaaa 20828266  T
Q  127 t--agaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttg 187  Q
    |  ||||| ||||||||||||||| ||||  |  || ||||||| |||||||| |||||||||    
T  20828265 tacagaaaccattacaaatgtccc-aaaatcataggcaattgttgtaatactcctttattttg 20828204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 22345951 - 22346054
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatca-aacacctagaatt-gctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    ||||||||  ||||| |||||| |||||||||||| |||||||||| ||||||| ||||| ||| | |||   | ||| |||||||||||||||||||||    
T  22345951 atgttttgtattgccaatttgcatgatttcttcttgaattacatcataacaccttgaatttgctatattttagggaaa-ctagaattacatgactcaaat 22346049  T
Q  128 agaaa 132  Q
    |||||    
T  22346050 agaaa 22346054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 19667087 - 19667052
Alignment:
Q  113 ttacatgactcaaatagaaaacattacaaatgtccc 148  Q
    |||||||| |||||||||||||||||||||||||||    
T  19667087 ttacatgagtcaaatagaaaacattacaaatgtccc 19667052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 9849928 - 9849833
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacat-caaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata 128  Q
    ||||||||||||||||||| |||||||||| | ||||||||  ||||| |||| ||||||| ||||||| ||| ||| | |||||||| |||||||||    
T  9849928 ttttgctttgccgatttgcatgatttcttcgtgaattacataaaaacaccctaaaattgctatgtttcgggaagaac-aaaattacat-actcaaata 9849833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 14573327 - 14573438
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atag 129  Q
    |||||||| |||||||| |||||||||  | |||||||||||| ||   ||| ||||||| ||||||| ||| || ||||||||||| | ||||  ||||    
T  14573327 ttgctttgacgatttgcatgatttctttgtgaattacatcaaaaacacactaaaattgctatgtttcgggaagaa-tagaattacat-attcaaatatag 14573424  T
Q  130 aaaacattacaaat 143  Q
    ||||||||||||||    
T  14573425 aaaacattacaaat 14573438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 17024839 - 17024789
Alignment:
Q  103 aaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    ||||||||||||||| ||||||||||  |||| |||||||||||||||||||    
T  17024839 aaaactagaattaca-gactcaaatatagaaaccattacaaatgtcccgaaa 17024789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 23970805 - 23970762
Alignment:
Q  111 aattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||    
T  23970805 aattacatgactcaaatacagaaaacattacaaatgttccgaaa 23970762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 206
Target Start/End: Original strand, 27911940 - 27912115
Alignment:
Q  32 gttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaatag 129  Q
    |||||||||||||||||||| |||||| ||||| ||||||||| ||||| |||||||||||| ||||||   |||||||||||||  |||||||||||||    
T  27911940 gttttgctttgccgatttgcatgattttttcttgaattacatcaaaacaccctagaattgctatgtttccgaaaaaactagaatt--atgactcaaatag 27912037  T
Q  130 aaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaa 206  Q
     ||||||||| |||||||| |||||  |  |  ||||||| |||||||| | ||||||||||||||||||||||||||    
T  27912038 caaacattacaaaatgtcctgaaaatcatagacaattgttctaatactcctctattttggattaaaactaaataaaaa 27912115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 26581444 - 26581573
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    ||||||||||||| |||||||||  ||||||||||||  |||||||| ||||| |||| ||||||| ||||||  ||| ||||| |||||||||||||||    
T  26581444 aaatgttttgcttagccgatttggatgatttcttctttgattacatcaaaacaccctaaaattgctatgtttcaggaagaactataattacatgactcaa 26581543  T
Q  126 -atagaaaacattacaaatgtcccgaaaac 154  Q
     |||||||||||||||||||||||||||||    
T  26581544 tatagaaaacattacaaatgtcccgaaaac 26581573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 17017062 - 17016942
Alignment:
Q  24 tttaaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cac-ctagaattgctttgtttcgcgaaaaactagaattacatgac 121  Q
    ||||| |||||||| ||||||||||||| |||||| |||||  ||||||||||| ||| ||||||||||| ||||| |  |||||||||||||||| |||    
T  17017062 tttaagatgttttgatttgccgatttgcatgatttattcttggattacatcaaaacactctagaattgctatgttttggaaaaaactagaattacaagac 17016963  T
Q  122 tcaaatagaaaacattacaaa 142  Q
    |||||||||||||| ||||||    
T  17016962 tcaaatagaaaacaatacaaa 17016942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 208
Target Start/End: Complemental strand, 20033332 - 20033161
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaatagaaaacat 136  Q
    |||| |||||||| |||||||||||| || || || ||| |||| |||||||| | ||||| |   |||||||||||||||| | |||| ||||||||||    
T  20033332 tttgtcgatttgcatgatttcttcttgaactaaattaaaacaccctagaattggtatgttttggagaaaactagaattacataattcaattagaaaacat 20033233  T
Q  137 tacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatg 208  Q
    ||||||||| |||||||| |  || ||||||| |||||||| | |||| | |||||||||||| | ||||||    
T  20033232 tacaaatgttccgaaaaccataggtaattgttctaatactcctctattcttgattaaaactaactgaaaatg 20033161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 15542523 - 15542407
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc---tagaattgctttgtttcgcgaaaaactagaattacatgactc--aaatagaaaa 133  Q
    |||||||||||||||||||||||| | |||||| ||||| |||   || ||||||| ||||||| |||||||||||||||||| ||||  | ||||||||    
T  15542523 tttgccgatttgcgtgatttcttcgtgaattacttcaaaaaccccttaaaattgctatgtttcg-gaaaaactagaattacat-actcagatatagaaaa 15542426  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||||||||    
T  15542425 cattacaaaagtcccgaaa 15542407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 14235508 - 14235387
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||| |||||| |||||| |||||||||| | ||||||||| ||||| |||| ||||||| ||||||| ||| || || |||||||||||||||      
T  14235508 atgtcttgttttgccaatttgcatgatttcttcgtgaattacatcaaaacaccctaaaattgctatgtttcgggaataa-tataattacatgactcaaat 14235410  T
Q  126 atagaaaacattacaaatgtccc 148  Q
    |||||||||||||||||||||||    
T  14235409 atagaaaacattacaaatgtccc 14235387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 12262321 - 12262211
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-ca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||| ||| |||||| |||| | ||||||||||||||||||||||||| || ||||    |||| | ||||| |||||||||||||||||| ||||||||    
T  12262321 atgtattgttttgccaattttcatgatttcttcttaaattacatcaaaacatcctatggctgctatttttcgggaaaaactagaattacataactcaaat 12262222  T
Q  128 agaaaacatta 138  Q
    |||||||||||    
T  12262221 agaaaacatta 12262211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 27116438 - 27116326
Alignment:
Q  38 ctttgccgatttgcgtgatttcttcttaaattacatcaaaca--cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    |||||||||||||| |||||||||  | |||||||| ||| |  |||||||||||| ||||||| ||| || ||||||||||| ||| |||||  |||||    
T  27116438 ctttgccgatttgcatgatttctttgtgaattacataaaaaaaccctagaattgctatgtttcgggaagaa-tagaattacat-actaaaatatagaaaa 27116341  T
Q  134 cattacaaatgtccc 148  Q
    |||||||||||||||    
T  27116340 cattacaaatgtccc 27116326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 21448806 - 21448755
Alignment:
Q  103 aaaactagaattacatgactcaaatagaaaacattac-aaatgtcccgaaaa 153  Q
    ||||||||||||||||||||||||  ||||||||||| ||||||||||||||    
T  21448806 aaaactagaattacatgactcaaaatgaaaacattacaaaatgtcccgaaaa 21448755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 21537056 - 21536949
Alignment:
Q  102 aaaaactagaattacatgactcaaatagaaaacattac-aaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaa 200  Q
    |||||||||||||||||||||||||   |||| || || ||||||||| ||||  || || ||||||| ||| |||| | || ||||||| ||||||||     
T  21537056 aaaaactagaattacatgactcaaaataaaaagatcacaaaatgtcccaaaaatcacaggcaattgttttaaaactcctataatttggatcaaaactaac 21536957  T
Q  201 taaaaatg 208  Q
    ||||||||    
T  21536956 taaaaatg 21536949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 31260846 - 31260803
Alignment:
Q  34 tttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    ||||||||| || ||||| |||||||||||||||||||||||||    
T  31260846 tttgctttgtcgttttgcatgatttcttcttaaattacatcaaa 31260803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 26022277 - 26022393
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc---tagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||| | | |||||| ||||| |||   || ||||||| ||||||  | || |||||||||| | |||||||  ||||||||    
T  26022277 tttgccgatttgcatgatttctccgtgaattacttcaaaaacctcttaaaattgctatgtttc-aggaagactagaatta-aagactcaaatatagaaaa 26022374  T
Q  134 cattacaaatgtcccgaaa 152  Q
    |||||||||||||||||||    
T  26022375 cattacaaatgtcccgaaa 26022393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 15631095 - 15631022
Alignment:
Q  79 acctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    ||||| ||||||| ||||||| ||||| |||||||||||| |||||||||  |||||||||||||| ||| |||||    
T  15631095 acctaaaattgctatgtttcgggaaaa-ctagaattacat-actcaaatatagaaaacattacaaaagtctcgaaa 15631022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 126
Target Start/End: Complemental strand, 22507589 - 22507501
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaa 126  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||||| ||||||| | ||||||||||||||| ||||||||    
T  22507589 tttgccgatttgcatgatttcttcgtgaattacttcaaaaaccccctaaaattgctatgtttcg-ggaaaactagaattaca-gactcaaa 22507501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 3002930 - 3003043
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||| ||||||  | |||| ||||||||||||||||||||    
T  3002930 atgttttgctttgccgatttgcatgatttcttcttgaattacatcaaaacaccgtagaattgctatgtttc-aggaaaagtagaattacatgactcaaat 3003028  T
Q  128 agaaaacattacaaa 142  Q
    |||||||||||||||    
T  3003029 agaaaacattacaaa 3003043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 26092775 - 26092950
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc-tagaattgctttgtttcg--cgaaaaactagaattacatgactc 123  Q
    |||||||||||||| ||||||||| |||||||||||| ||||||||| ||||||| |||||||||| |||||||    |||||||||||||| |||||||    
T  26092775 aaatgttttgctttaccgatttgcatgatttcttcttgaattacatcaaaacaccatagaattgctatgtttcggaaaaaaaactagaattatatgactc 26092874  T
Q  124 aa-atagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaa 199  Q
    || |||||||| |||||||||||||||||||| |  |  ||||||| |||||||| | |||| | ||| ||||||||    
T  26092875 aatatagaaaa-attacaaatgtcccgaaaaccatagacaattgttctaatactcctctattctagatgaaaactaa 26092950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 102 - 208
Target Start/End: Original strand, 4838860 - 4838963
Alignment:
Q  102 aaaaactagaattacatgactcaaatagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaat 201  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| |  |||||||||| ||||||||    ||| |||||||||||||| |    
T  4838860 aaaaactagaattacatgagtcaaacagaaaacattacaaatatcccaaaaaccataggaaattgttctaatactc---cattctggattaaaactaatt 4838956  T
Q  202 aaaaatg 208  Q
     ||||||    
T  4838957 gaaaatg 4838963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 25530881 - 25530774
Alignment:
Q  102 aaaaactagaattacatgactcaaatagaaaacattacaaa-tgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaa 200  Q
    |||||||||||||| |||||||||||||||| || || ||| |||||| |||||||     | ||||| |||||||| | ||||||||||||||||||||    
T  25530881 aaaaactagaattatatgactcaaatagaaagcactaaaaaatgtcccaaaaactataaatagttgttctaatactcctctattttggattaaaactaaa 25530782  T
Q  201 taaaaatg 208  Q
    ||||||||    
T  25530781 taaaaatg 25530774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 31284123 - 31284002
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat---a 128  Q
    ||||||||||||||||| |||||||||| | |||||||||||| |   |||| ||||||| ||||| | ||| || |||||||||| |||||||||   |    
T  31284123 ttgctttgccgatttgcatgatttcttcgtcaattacatcaaaaacaccctaaaattgctatgttttgggaataa-tagaattaca-gactcaaatataa 31284026  T
Q  129 gaaaacattacaaatgtcccgaaa 152  Q
     |||||||||||||||||||||||    
T  31284025 aaaaacattacaaatgtcccgaaa 31284002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 18466917 - 18466807
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaataga 130  Q
    |||||||||||| |||||| | |||| ||||| | |||||| ||| |||| || |||| || ||||||| |||||| || ||||||||||||| ||||||    
T  18466917 ttttgctttgccaatttgcattattttttctttagttacattaaaacaccatataatttctatgtttcgggaaaaa-taaaattacatgactcgaataga 18466819  T
Q  131 aaacattacaaa 142  Q
    ||||||||||||    
T  18466818 aaacattacaaa 18466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 27073834 - 27073940
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| ||||| ||   ||| ||||||| ||||||| | ||||||||||||||| |||||||  ||||||||    
T  27073834 tttgccgatttgcatgatttcttcgtgaattacttcaaaaacccgctaaaattgctatgtttcg-ggaaaactagaattaca-gactcaaatatagaaaa 27073931  T
Q  134 cattacaaa 142  Q
    |||||||||    
T  27073932 cattacaaa 27073940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 51118631 - 51118524
Alignment:
Q  103 aaaactagaattacatgactcaaatagaaaacattacaa-atgtcccgaaaactacgggaaattgttataatactcattta-ttttggattaaaactaaa 200  Q
    |||||||||||||||||| || ||  ||||||||||||| |  |||||||||| |  || ||||||| ||| |||| |||| |||||||| |||||||||    
T  51118631 aaaactagaattacatgattcgaaatgaaaacattacaataattcccgaaaaccataggcaattgttctaaaactcctttaattttggatcaaaactaaa 51118532  T
Q  201 taaaaatg 208  Q
    ||||||||    
T  51118531 taaaaatg 51118524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 177
Target Start/End: Original strand, 14977692 - 14977828
Alignment:
Q  43 ccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacatt 137  Q
    ||||||||| |||||||||| | |||||| |||||   | |||| || |||| ||||||| ||||| |||||||||||| |||||||||  |||||||||    
T  14977692 ccgatttgcatgatttcttcgtgaattacttcaaaacccccctaaaaatgctatgtttcgggaaaa-ctagaattacat-actcaaatatagaaaacatt 14977789  T
Q  138 acaaatgtcccgaaaactacgggaaattgttataatactc 177  Q
    ||||| ||||||||| | |  || ||||||||||||||||    
T  14977790 acaaaagtcccgaaatc-ataggcaattgttataatactc 14977828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 8765557 - 8765672
Alignment:
Q  40 ttgccgatttgcgtgatttcttcttaaattacatcaaacacc---tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaac 134  Q
    |||||||| ||| |||||||||| | |||||| ||||| |||   || ||||||| ||||||  ||||| ||||||||||| ||||||||||  ||||||    
T  8765557 ttgccgatctgcatgatttcttcgtgaattacttcaaaaaccccctaaaattgctatgtttcaagaaaa-ctagaattaca-gactcaaatatagaaaac 8765654  T
Q  135 attacaaatgtcccgaaa 152  Q
    |||||||| |||||||||    
T  8765655 attacaaaagtcccgaaa 8765672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 7208395 - 7208442
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    ||||||||||||| | |||||| |||||| ||||||||||||||||||    
T  7208395 atgttttgctttgtcaatttgcatgattttttcttaaattacatcaaa 7208442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 13906754 - 13906682
Alignment:
Q  80 cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    |||| ||||||| ||||||| ||| || |||||||||| ||||||||||  ||||||||||||||||||||||||    
T  13906754 cctaaaattgctatgtttcgggaagaa-tagaattaca-gactcaaatatagaaaacattacaaatgtcccgaaa 13906682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 16242405 - 16242302
Alignment:
Q  40 ttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaatagaaaacat 136  Q
    ||||| |||||| |||||||||| | |||||  |||||   | |||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||| |    
T  16242405 ttgccaatttgcatgatttcttcgtgaattaattcaaaacccccctaaaattgctatgtttcg-gcaaaactagaattaca-gactcaaatagaaaactt 16242308  T
Q  137 tacaaa 142  Q
    ||||||    
T  16242307 tacaaa 16242302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 20886742 - 20886789
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||| ||||||||||||||||| |||||||||| | ||||||||||||    
T  20886742 atgtcttgctttgccgatttgcatgatttcttcgtgaattacatcaaa 20886789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 8145130 - 8145246
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc---tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    ||||||||||||| |||||| ||| | |||||  ||||| |||   || ||||||| ||||||| ||||| ||| |||||||| |||||||||  |||||    
T  8145130 tttgccgatttgcatgatttgttcgtgaattatttcaaaaaccccctaaaattgctatgtttcgggaaaa-ctataattacat-actcaaatatagaaaa 8145227  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||||||||    
T  8145228 cattacaaaagtcccgaaa 8145246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 18747754 - 18747804
Alignment:
Q  103 aaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    |||||||||||||||| |||||||||  |||||||||||||| |||||||||    
T  18747754 aaaactagaattacat-actcaaatatagaaaacattacaaaagtcccgaaa 18747804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 27871156 - 27871257
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacac-ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||||||||||||||||||| |||||||| ||| ||||||||| |||||| ||||||||| | |||||||  ||||| ||||||||||||||||||    
T  27871156 aaatgttttgctttgccgatttgcatgatttctccttgaattacatcaaaacactctagaattgttatgtttcggaaaaaattagaattacatgactcaa 27871255  T
Q  126 at 127  Q
    ||    
T  27871256 at 27871257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 34369198 - 34369320
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||||||||| ||||||||||||| ||||||| |||| ||||| ||| ||||||| || ||||||| ||||||| ||||| |||||||||||||||||||    
T  34369198 aaatgttttgttttgccgatttgcatgatttcatcttgaattatatcaaaacaccataaaattgctatgtttcgggaaaagctagaattacatgactcaa 34369297  T
Q  126 -atagaaaacattacaaatgtcc 147  Q
     ||| ||  ||||||||||||||    
T  34369298 tataaaattcattacaaatgtcc 34369320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 25938402 - 25938584
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cac-ctagaattgctttgtttcgc-gaaaaactagaattacatgactcaaa 126  Q
    |||||||| ||| || |||||| | |||||||||| |||||||||||| ||| |||  |||||| ||||| |  ||||||||| |||||||| |||||||    
T  25938402 atgttttgttttaccaatttgcataatttcttcttgaattacatcaaaacactctaagattgctatgttttggtgaaaaactataattacattactcaaa 25938501  T
Q  127 tagaaaacatt---acaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaa 206  Q
    ||||||||| |   | ||||||||| ||||| |  || ||||| | |||||||  | ||||||||||||||||||||||||||    
T  25938502 tagaaaacaataaaaaaaatgtcccaaaaaccataggcaattgctctaatactattctattttggattaaaactaaataaaaa 25938584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 32141615 - 32141490
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||| ||||||||||||| |||||||||| | |||| |||| ||||| | |||||||||| ||||||  ||| || | ||||||||||||||||      
T  32141615 atgtcttgttttgccgatttgcatgatttcttcgtgaatttcatcaaaacatcttagaattgctatgtttcaggaagaa-ttgaattacatgactcaaat 32141517  T
Q  126 atagaaaacattacaaatgtcccgaaa 152  Q
    ||||||||||||||||||||| |||||    
T  32141516 atagaaaacattacaaatgtctcgaaa 32141490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 25537438 - 25537554
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||||| ||||||| | ||||||||||||||| |||||||  ||||||||    
T  25537438 tttgccgatttgcatgatttcttcgtgaattacttcaaaacccccctaaaattgctatgtttcg-ggaaaactagaattaca-gactcaaatatagaaaa 25537535  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||| ||||    
T  25537536 cattacaaaagtccagaaa 25537554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 27907737 - 27907621
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| ||||| |   |||| ||||||| ||||||| ||||| |||||||||||  |||||||||  |||||    
T  27907737 tttgccgatttgcatgatttcttcgtgaattacttcaaaaaaaccctaaaattgctatgtttcgggaaaa-ctagaattacaa-actcaaatatagaaaa 27907640  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||||||||    
T  27907639 cattacaaaagtcccgaaa 27907621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 30682428 - 30682300
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatca-aaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    ||||||||||||  || ||||||| |||||||||||| || ||||||| |||| |||||||||||| ||||||| |  |||||| | || ||||| ||||    
T  30682428 aaatgttttgctaagctgatttgcatgatttcttcttgaactacatcataacaccctagaattgctatgtttcgggggaaactatagttgcatgattcaa 30682329  T
Q  126 -atagaaaacattacaaatgtcccgaaaac 154  Q
     |||||||||||||| | ||||||||||||    
T  30682328 tatagaaaacattac-actgtcccgaaaac 30682300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 32438906 - 32438790
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||| ||||| |||| |||||| | |||||||||| | ||||||||  ||||||| |||||||||| ||||||| | |||| |||| |||||||||||||    
T  32438906 aaatattttgttttgtcgatttacatgatttcttcgtgaattacatttaaacaccctagaattgctatgtttcg-ggaaaagtagagttacatgactcaa 32438808  T
Q  126 -atagaaaacattacaaa 142  Q
     |||||||||||||||||    
T  32438807 catagaaaacattacaaa 32438790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 8445697 - 8445650
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||||    
T  8445697 atgttttgctttgccgatttgcataatttcttcttgaattacatcaaa 8445650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 29717579 - 29717457
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca--cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||||||||||||||||| | |||||||| | |||||||||||| |  | |||||||||| ||||||| ||| |   | |||||||| ||||||      
T  29717579 atgtattgctttgccgatttgcattatttcttcgtgaattacatcaaaaaaccttagaattgctatgtttcgggaaga---ataattacat-actcaaat 29717484  T
Q  126 atagaaaacattacaaatgtcccgaaa 152  Q
    |||||||||||||||||| ||||||||    
T  29717483 atagaaaacattacaaatatcccgaaa 29717457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 25886362 - 25886290
Alignment:
Q  80 cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    |||| ||||||| ||||||| ||||| ||||||||||| ||||||||||  |||||||||||||| |||||||||    
T  25886362 cctaaaattgctatgtttcgggaaaa-ctagaattaca-gactcaaatatagaaaacattacaaaagtcccgaaa 25886290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 28930150 - 28930272
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacatcaaacacc---tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata- 128  Q
    ||||| ||||||||||||| |||||||||| | |||||| |||||  ||   || ||||||| ||||||  ||||||||| ||||| | ||||||||||     
T  28930150 ttttgatttgccgatttgcatgatttcttcgtgaattacttcaaaacccctctaaaattgctatgtttca-gaaaaactataattata-gactcaaatat 28930247  T
Q  129 -gaaaacattacaaatgtcccgaaa 152  Q
     |||||||||||||| |||||||||    
T  28930248 agaaaacattacaaaagtcccgaaa 28930272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 208
Target Start/End: Original strand, 42153593 - 42153688
Alignment:
Q  114 tacatgactcaaatagaaaacattacaaa-tgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaataaaaatg 208  Q
    |||||||||| ||  |||||||||| ||| |||||||||||| |  || ||||||| ||| |||||| || ||||||  |||||||||||||||||    
T  42153593 tacatgactcgaaatgaaaacattagaaaatgtcccgaaaaccataggcaattgttctaaaactcatataatttggaacaaaactaaataaaaatg 42153688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 18758232 - 18758299
Alignment:
Q  85 aattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaacattacaaatgtcccgaaa 152  Q
    ||||||| ||||||| ||||| ||||||||||| ||||||||||  |||||||||||||| |||||||||    
T  18758232 aattgctatgtttcgggaaaa-ctagaattaca-gactcaaatatagaaaacattacaaaagtcccgaaa 18758299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 17350860 - 17350976
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||  |||||   | |||| ||||||| ||||||| | ||||||||||||||  |||||||  ||||||||    
T  17350860 tttgccgatttgcatgatttcttcgtgaattaattcaaaaaccccctaaaattgctatgtttcg-ggaaaactagaattac-ggactcaaatatagaaaa 17350957  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||| ||||    
T  17350958 cattacaaaagtcctgaaa 17350976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 25196493 - 25196609
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    ||||||||||||| |||||| ||| | |||||| |||||   | |||| ||||||| ||||| | ||||| |||||| |||| ||||||||||  |||||    
T  25196493 tttgccgatttgcttgattttttcgtgaattacttcaaaatccccctaaaattgctatgttttgggaaaa-ctagaaataca-gactcaaatatagaaaa 25196590  T
Q  134 cattacaaatgtcccgaaa 152  Q
    ||||||||| |||||||||    
T  25196591 cattacaaaagtcccgaaa 25196609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 27420945 - 27421069
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca--cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||| ||||||||||||| | | ||||||| || | ||||||| ||||    |||| ||||||| ||||||| ||| || || |||||||| ||||||||    
T  27420945 atgtcttgctttgccgatatacatgatttcatcgtgaattacaacaaaatatcctaaaattgctatgtttcgggaagaa-tataattacat-actcaaat 27421042  T
Q  128 a--gaaaacattacaaatgtcccgaaa 152  Q
    |  ||||||||||||||||||||||||    
T  27421043 atagaaaacattacaaatgtcccgaaa 27421069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 34395507 - 34395402
Alignment:
Q  102 aaaaactagaattacatgactcaaatagaaaacattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaat 201  Q
    ||||||||||||||   ||||||||||||||||| ||||||||||| |||||  |   | ||||||| |||||||| | |||||||||||||||||||||    
T  34395507 aaaaactagaattatccgactcaaatagaaaacaatacaaatgtcctgaaaatcatatgcaattgttctaatactcctctattttggattaaaactaaat 34395408  T
Q  202 aaaaat 207  Q
    ||||||    
T  34395407 aaaaat 34395402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 21546993 - 21546866
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattaca-tcaaacacc-tagaattgctttgtttcgcgaaaaactagaattacatgac-tca 124  Q
    |||||||| |||||| |||||  | |||||||||||| ||||||| | ||||||| |||||||||| ||||||| | ||||||||||||||||||| | |    
T  21546993 aaatgtttagctttgtcgatt--catgatttcttcttgaattacactaaaacaccctagaattgctatgtttcgaggaaaactagaattacatgacttga 21546896  T
Q  125 aatagaaaacattacaaatgtcccgaaaac 154  Q
     |||||||| |||||||||||||| |||||    
T  21546895 tatagaaaatattacaaatgtcccaaaaac 21546866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 30356136 - 30356261
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactc--aa 125  Q
    |||| ||||||||||||||||| |||||||| | | ||||||||| ||||| |||||||||| | ||||||| ||| || ||||||||||||||||  |     
T  30356136 atgtcttgctttgccgatttgcatgatttctccgtgaattacatcaaaacatcctagaattgatatgtttcgggaataa-tagaattacatgactcatat 30356234  T
Q  126 atagaaaacattacaaatgtcccgaaa 152  Q
    ||| ||||||||| |||||||||||||    
T  30356235 atataaaacattataaatgtcccgaaa 30356261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 32759852 - 32759961
Alignment:
Q  40 ttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaa--tagaaaaca 135  Q
    |||||||||||| |||||||||| | ||||||||| ||||| |||||||||||| ||||| | | |||| |||||||||||||||||||  |||||||||    
T  32759852 ttgccgatttgcatgatttcttcgtgaattacatcaaaacatcctagaattgctatgttttg-ggaaaagtagaattacatgactcaaatttagaaaaca 32759950  T
Q  136 ttacaaatgtc 146  Q
    ||||| |||||    
T  32759951 ttacacatgtc 32759961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 152
Target Start/End: Complemental strand, 22564766 - 22564648
Alignment:
Q  37 gctttgccgatttgcgtgatttcttcttaaattacatcaa--acacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaa 131  Q
    |||||| |||||||| |||||||||| | |||||||||||  ||||| || ||||||| ||||||| ||| ||| ||||||||| ||||||||||  |||    
T  22564766 gctttgtcgatttgcatgatttcttcgtgaattacatcaacaacaccctaaaattgctatgtttcgagaagaac-agaattaca-gactcaaatatagaa 22564669  T
Q  132 aacattacaaatgtcccgaaa 152  Q
    |||||||||||||||||||||    
T  22564668 aacattacaaatgtcccgaaa 22564648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 27961095 - 27961254
Alignment:
Q  38 ctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    |||||||||||||| |||||||||| | ||||||||| ||||| |||||||||||| ||||||| ||| || | ||||||||||| ||||  |||||| |    
T  27961095 ctttgccgatttgcatgatttcttcgtgaattacatcaaaacaccctagaattgctatgtttcgggaagaa-tggaattacatgaatcaaatatagaata 27961193  T
Q  134 cattacaaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaa 195  Q
    |||| |||| ||||| ||||  |   |||||| ||||||||||| | |||||||||||||||    
T  27961194 catttcaaacgtccc-aaaatcataagaaatttttataatactcctctattttggattaaaa 27961254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 153
Target Start/End: Original strand, 10822110 - 10822235
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||||||||||||||||| |||||||||| | ||||||||| ||||| |||||||||||| |||||   | |||| ||||||||||| ||  ||      
T  10822110 atgtcttgctttgccgatttgcatgatttcttcgt-aattacatcaaaacaccctagaattgctatgttttaag-aaaattagaattacataacaaaaat 10822207  T
Q  126 atagaaaacattacaaatgtcccgaaaa 153  Q
    ||||||||||||||||||||||||||||    
T  10822208 atagaaaacattacaaatgtcccgaaaa 10822235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 147
Target Start/End: Complemental strand, 21079944 - 21079825
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||||| |||| || |||| || ||| ||| |||| | |||||||||| |||||||||    
T  21079944 atgtcttgctttgccgatttgcatgatttcttcttgaattacatcaaaacaccataaaatttctatgtatcg-gaaataatagaattaca-gactcaaat 21079847  T
Q  128 a--gaaaacattacaaatgtcc 147  Q
    |  ||||||||| |||||||||    
T  21079846 atagaaaacattgcaaatgtcc 21079825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 9387505 - 9387558
Alignment:
Q  102 aaaaactagaattacatgactcaa-atagaaaacattacaaatgtcccgaaaac 154  Q
    |||||| | ||||||||||||||| |||||||||||||||||||||||||||||    
T  9387505 aaaaaccataattacatgactcaatatagaaaacattacaaatgtcccgaaaac 9387558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 150
Target Start/End: Original strand, 14723567 - 14723680
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc--tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaac 134  Q
    ||||| ||||||| |||||||||| | |||||| ||||| |||  || ||||||| ||||||  ||||||||||||||||| ||||||||||  ||||||    
T  14723567 tttgctgatttgcatgatttcttcgtgaattacttcaaaaacccctaaaattgctatgtttca-gaaaaactagaattaca-gactcaaatatagaaaac 14723664  T
Q  135 attacaaatgtcccga 150  Q
    |||||||| |||||||    
T  14723665 attacaaaagtcccga 14723680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 23005461 - 23005345
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    ||||||||||||| |||||||||| | ||| || |||||   | |||  ||||||||||||| | ||||| |||||||||||| |||||||||  |||||    
T  23005461 tttgccgatttgcatgatttcttcgtgaataacttcaaaatccccctcaaattgctttgttttgggaaaa-ctagaattacat-actcaaatatggaaaa 23005364  T
Q  134 cattacaaatgtcccgaaa 152  Q
    |||||||||||||||||||    
T  23005363 cattacaaatgtcccgaaa 23005345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 152
Target Start/End: Original strand, 23782905 - 23783021
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaa 133  Q
    ||||||||||||| |||||||||| | ||| || |||||   | |||  ||||||||||||| | ||||| |||||||||||| |||||||||  |||||    
T  23782905 tttgccgatttgcatgatttcttcgtgaataacttcaaaatccccctcaaattgctttgttttgggaaaa-ctagaattacat-actcaaatatggaaaa 23783002  T
Q  134 cattacaaatgtcccgaaa 152  Q
    |||||||||||||||||||    
T  23783003 cattacaaatgtcccgaaa 23783021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 9507494 - 9507369
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa- 125  Q
    |||||||| |||||||||||   |||||||||| | |||||||||||| |   |||| ||||||| ||| ||| ||| || ||||||||||| ||||||     
T  9507494 atgttttgatttgccgatttttatgatttcttcgtgaattacatcaaaaacaccctataattgctatgtctcgggaataa-tagaattacat-actcaaa 9507397  T
Q  126 -atagaaaacattacaaatgtcccgaaa 152  Q
     |||||||| ||||||||||||||||||    
T  9507396 tatagaaaatattacaaatgtcccgaaa 9507369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 20404233 - 20404187
Alignment:
Q  31 tgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa 77  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||    
T  20404233 tgttttgctttgccgatttgcatgatttcttcgtgaattacatcaaa 20404187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 146
Target Start/End: Complemental strand, 8038271 - 8038155
Alignment:
Q  33 ttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--at 127  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||| |   |||| ||||||| ||||| | | || ||||||||| || |||||||  ||    
T  8038271 ttttgctttgccgatttgcatgatttcttcgtaaattacttcaaaaacaccctaaaattgctatgttttg-ggaagactagaattgca-gactcaaatat 8038174  T
Q  128 agaaaacattacaaatgtc 146  Q
    ||||||||||| |||||||    
T  8038173 agaaaacattataaatgtc 8038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 9339201 - 9339081
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa--cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||||||||| ||||||  |||||||||| | ||||||||||||    |||| ||||||| ||||||| |||| | ||||||||||  ||||||      
T  9339201 atgtcttgctttgcagatttgaatgatttcttcatgaattacatcaaaataccctaaaattgctatgtttcg-gaaagaatagaattaca-aactcaaat 9339104  T
Q  126 atagaaaacattacaaatgtccc 148  Q
    |||||||||||||||||||||||    
T  9339103 atagaaaacattacaaatgtccc 9339081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 18171467 - 18171352
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc--tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaac 134  Q
    ||||||||||||| |||||||||| | |||||  | |||| ||  |  ||||||||||||||| ||||| ||| ||||||| ||||||||||  ||||||    
T  18171467 tttgccgatttgcatgatttcttcatgaattaattaaaacccccctcaaattgctttgtttcgggaaaa-ctacaattaca-gactcaaatatagaaaac 18171370  T
Q  135 attacaaatgtcccgaaa 152  Q
    |||||||| |||||||||    
T  18171369 attacaaaagtcccgaaa 18171352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 11136800 - 11136916
Alignment:
Q  41 tgccgatttgcgtgatttcttcttaaattacatcaaac---acctagaattgctttgtttcgcgaaaaactagaa-ttacatgactcaa--atagaaaac 134  Q
    ||||||||||| |||||| ||| | |||||| |||||    ||||| ||||||||| |||||  ||||||||||| ||||| |||||||  |||||||||    
T  11136800 tgccgatttgcatgatttattcatgaattacttcaaaagcaacctaaaattgctttttttcgtaaaaaactagaatttaca-gactcaaatatagaaaac 11136898  T
Q  135 attacaaatgtcccgaaa 152  Q
    |||||||| ||| |||||    
T  11136899 attacaaaagtctcgaaa 11136916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 35 - 152
Target Start/End: Complemental strand, 28904186 - 28904066
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--ga 130  Q
    ||||||||||||||||| |||||| ||| | |||||||||||| || | || ||||||| ||||||  |||||| || ||||||||||||||||||  ||    
T  28904186 ttgctttgccgatttgcatgatttgttcgtgaattacatcaaaacatcatataattgctatgtttcaggaaaaa-tataattacatgactcaaatataga 28904088  T
Q  131 aaacattacaaatgtcccgaaa 152  Q
    ||||||||||||||||||||||    
T  28904087 aaacattacaaatgtcccgaaa 28904066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 17649673 - 17649789
Alignment:
Q  28 aaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa 125  Q
    |||| |||| |||||||||||||| |||||||||| ||||||||||| ||||| |||||||||| | ||||||| | |||| |||| || ||||||||||    
T  17649673 aaatattttactttgccgatttgcatgatttcttcgtaaattacatcaaaacatcctagaattgatatgtttcgag-aaaagtagagttccatgactcaa 17649771  T
Q  126 -atagaaaacattacaaa 142  Q
     |||||||| ||||||||    
T  17649772 tatagaaaatattacaaa 17649789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 35861685 - 35861561
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||||||| ||||||||||||| |||||||||  | ||||||||| ||||| ||||| |||||| ||||| | |||||| ||||||||||||||| ||      
T  35861685 atgttttgttttgccgatttgcatgatttctttgtgaattacatcaaaacaccctag-attgctatgttttg-gaaaaagtagaattacatgacttaaat 35861588  T
Q  126 atagaaaacattacaaatgtcccgaaa 152  Q
    |||||||||||||| ||| ||||||||    
T  35861587 atagaaaacattacgaatatcccgaaa 35861561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 30832821 - 30832930
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaa---cacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaa 133  Q
    ||||||||||||| |||||||||| | |||||| |||||   | |||| ||||||| ||||||| |||||||||||||||||  ||||||  ||||||||    
T  30832821 tttgccgatttgcatgatttcttcgtgaattacttcaaaaacctcctaaaattgctatgtttcg-gaaaaactagaattaca-aactcaaacatagaaaa 30832918  T
Q  134 cattacaaatgt 145  Q
    ||||||||||||    
T  30832919 cattacaaatgt 30832930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 15176646 - 15176531
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatc--aaacacctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atagaaaac 134  Q
    ||||||||||||| |||||||||| | |||||| ||  |||| |||| ||||||| ||||| | | ||||||||||||||| |||||||  |||||||||    
T  15176646 tttgccgatttgcatgatttcttcgtgaattacttcaaaaacccctaaaattgctatgttttg-ggaaaactagaattaca-gactcaaatatagaaaac 15176549  T
Q  135 attacaaatgtcccgaaa 152  Q
    || ||||| |||||||||    
T  15176548 ataacaaaagtcccgaaa 15176531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 145
Target Start/End: Complemental strand, 24851163 - 24851050
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaa--taga 130  Q
    ||||||||||||||||| |||||| ||  | ||||||||| ||||| |||| ||||||| ||||| | ||| || |||||||| ||||||||||  ||||    
T  24851163 ttgctttgccgatttgcatgatttatttgtgaattacatcaaaacatcctaaaattgctatgttttgggaagaa-tagaattatatgactcaaatgtaga 24851065  T
Q  131 aaacattacaaatgt 145  Q
    |||||||||||||||    
T  24851064 aaacattacaaatgt 24851050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 17976184 - 17976222
Alignment:
Q  108 tagaattacatgactcaaatagaaaacattacaaatgtc 146  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17976184 tagaattacatgactcaattagaaaacattacaaatgtc 17976222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 15557341 - 15557388
Alignment:
Q  108 tagaattacatgactcaaa--tagaaaacattacaaatgtcccgaaaa 153  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||    
T  15557341 tagaattacatgactcaaacatagaaaaccttacaaatgtcccgaaaa 15557388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 151
Target Start/End: Complemental strand, 24381545 - 24381426
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atag 129  Q
    ||||||||||||||||| |||||||||| | |||||||||||| |   |||| ||||||| |||| || ||| || |||||||||| |||||||  ||||    
T  24381545 ttgctttgccgatttgcatgatttcttcgtgaattacatcaaaaacaccctaaaattgctatgttacgggaataa-tagaattaca-gactcaaatatag 24381448  T
Q  130 aaaacattacaaatgtcccgaa 151  Q
    |||||| |||||| || |||||    
T  24381447 aaaacaatacaaaagtaccgaa 24381426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 24091092 - 24090977
Alignment:
Q  39 tttgccgatttgcgtgatttcttcttaaattacatcaaacacc--tagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--gaaaac 134  Q
    |||||| |||||| |||||||||| | |||||| |||||| ||  || ||||||| ||||| | ||||| ||||||||||| ||||||||||  ||||||    
T  24091092 tttgccaatttgcatgatttcttcgtgaattacttcaaacccccctaaaattgctatgttttgagaaaa-ctagaattaca-gactcaaatatagaaaac 24090995  T
Q  135 attacaaatgtcccgaaa 152  Q
    |||||||  |||||||||    
T  24090994 attacaagagtcccgaaa 24090977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 148
Target Start/End: Original strand, 17980666 - 17980787
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaaca---cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa- 125  Q
    |||| ||| ||||||||||||| |||||| ||| | |||||||||||| |   |||||||||||| ||||||| ||| || ||||| ||||  ||||||     
T  17980666 atgtcttgatttgccgatttgcatgattttttcgtgaattacatcaaaaacatcctagaattgctatgtttcgtgaagaa-tagaactaca-aactcaaa 17980763  T
Q  126 -atagaaaacattacaaatgtccc 148  Q
     |||||||||||| ||||||||||    
T  17980764 tatagaaaacattgcaaatgtccc 17980787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 19785000 - 19784883
Alignment:
Q  34 tttgctttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata-- 128  Q
    ||||||||| |||||||| |||||||||| | |||||||||||| ||   ||| ||||||| | ||||  ||| ||| |||||||||| |||||||||      
T  19785000 tttgctttgtcgatttgcatgatttcttcgtgaattacatcaaaaacaccctaaaattgctatatttcaggaagaac-agaattacat-actcaaatata 19784903  T
Q  129 gaaaacattacaaatgtccc 148  Q
    ||||||||||||||| ||||    
T  19784902 gaaaacattacaaatatccc 19784883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 17510854 - 17510902
Alignment:
Q  103 aaaactagaattacatgactcaaatagaaaacattacaaatgtcccgaaa 152  Q
    ||||||||||||||| |||||||||||||||||||| ||| || ||||||    
T  17510854 aaaactagaattaca-gactcaaatagaaaacattataaaagttccgaaa 17510902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 154
Target Start/End: Original strand, 18836748 - 18836792
Alignment:
Q  111 aattacatgactcaa-atagaaaacattacaaatgtcccgaaaac 154  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||    
T  18836748 aattacatgactcaatatagtaaacattacaaatgtcctgaaaac 18836792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 38164 - 38283
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaa-- 125  Q
    |||| ||| ||| |||||||||||||||||||| | ||||||||| ||||| |||| ||||| | ||||||| ||||||  |||||||||||||||||      
T  38164 atgtcttgtttttccgatttgcgtgatttcttcgtgaattacatcaaaacaccctaaaattgttatgtttcgggaaaaa-gagaattacatgactcaaat 38262  T
Q  126 atagaaaacattacaaatgtc 146  Q
    |||||||||||||||||||||    
T  38263 atagaaaacattacaaatgtc 38283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 23872 - 23991
Alignment:
Q  27 aaaatgttttgctttgccgatttgcgtgatttcttcttaaattacatc-aaacacct-agaattgctttgtttcgcgaaaaactagaattacatgactca 124  Q
    ||||||||||| | |||| || | | |||||| ||||| ||||||||| |||||||| | ||||||  ||||||| |||||||| |||||||||||||||    
T  23872 aaaatgttttgttgtgcccatgtacatgatttattcttgaattacatcgaaacaccttataattgccatgtttcgagaaaaacttgaattacatgactca 23971  T
Q  125 a-atagaaaacattacaaat 143  Q
    | ||||||||||||||||||    
T  23972 atatagaaaacattacaaat 23991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 11966 - 12090
Alignment:
Q  30 atgttttgctttgccgatttgcgtgatttcttcttaaattacatcaaa-cacc-tagaattgctttgtttcgcgaaaaactagaattacatgactcaaat 127  Q
    |||| ||||||||| ||||||  |||||||||| ||||||| |||||| |||| |||||||||| ||||| | ||| || |||||||||| |||||||||    
T  11966 atgtcttgctttgctgatttgtatgatttcttcgtaaattaaatcaaaacaccctagaattgctatgttttgggaagaa-tagaattaca-gactcaaat 12063  T
Q  128 a--gaaaacattacaaatgtcccgaaa 152  Q
    |  |||||||||| |||||||||||||    
T  12064 atagaaaacattataaatgtcccgaaa 12090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 13012 - 12896
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatc-aaaca-cctagaattgctttgtttcgcgaaaaactagaattacatgactcaaata--ga 130  Q
    |||||||| |||||||| |||||||||  | ||||||||| ||||| |||||||||||| ||||||  | |||| |||||| ||||||||||||||   |    
T  13012 ttgctttgtcgatttgcttgatttctttgtgaattacatcaaaacatcctagaattgctatgtttc-aggaaaagtagaataacatgactcaaatatgaa 12914  T
Q  131 aaacattacaaatgtccc 148  Q
    ||||||||||||| ||||    
T  12913 aaacattacaaatatccc 12896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 208
Target Start/End: Complemental strand, 64097 - 63991
Alignment:
Q  103 aaaactagaattacatgactcaaatagaaaacatta-caaatgtcccgaaaactacgggaaattgttataatactcatttattttggattaaaactaaat 201  Q
    |||||||||| |||||||||| || |||||||||||  ||||||||| ||||| |  |  ||||||| ||| |||| | || ||||||| ||||||||||    
T  64097 aaaactagaaatacatgactcgaaaagaaaacattataaaatgtcccaaaaaccaaagacaattgttctaaaactcctctaatttggatcaaaactaaat 63998  T
Q  202 aaaaatg 208  Q
    |||||||    
T  63997 aaaaatg 63991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 244049 - 243938
Alignment:
Q  35 ttgctttgccgatttgcgtgatttcttcttaaattacatcaaacac---ctagaattgctttgtttcgcgaaaaactagaattacatgactcaa--atag 129  Q
    |||||||| |||||||| |||||||||  | |||||||||||| ||   ||| ||||||| ||||||| ||| || ||||||||||| | ||||  ||||    
T  244049 ttgctttgacgatttgcatgatttctttgtgaattacatcaaaaacacactaaaattgctatgtttcgggaagaa-tagaattacat-attcaaatatag 243952  T
Q  130 aaaacattacaaat 143  Q
    ||||||||||||||    
T  243951 aaaacattacaaat 243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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