View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_34 (Length: 434)
Name: NF8260A_low_34
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 47584080 - 47583682
Alignment:
| Q |
20 |
gaatcttgttgaaacctatgaaaggttctcggagaaatggcgattgattattagaagagtaacatgcacgtgtgcaggcagtgaatcattctactgtgtg |
119 |
Q |
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| T |
47584080 |
gaatcttgttgaaacctatgaaaggttctcggagaaatggcgattgattattagaagagtaacatgcacgtgtgcaggcagtgaatcattctagtgtgtg |
47583981 |
T |
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| Q |
120 |
ctcttggagtggagccatttgtaagtctagggaaactaccaaaaggcttagcgttgatttggcacaccattttgtggtcaatatagaatgctagaaatga |
219 |
Q |
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| T |
47583980 |
ctcttggagtggagccatttgtaagtctagggaaactaccaaaaggcttagcgttgatttggcacaccattttgtggtcaatatagaatgctagaaatga |
47583881 |
T |
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| Q |
220 |
catcatattttggggaaaacatgcaaaggtggaagaggtagtatgtaagatcaagcacttgtcttggaattggttttggagaagaaaaatagggg--tat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
47583880 |
catcatattttggggaaaacatgcaaaggtggaagaggtagtatgtaagatcaagcacttgtcttggaattggttttggagaag-aaaataggggtatat |
47583782 |
T |
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| Q |
318 |
ccttgtttattttgtgtagattgtatcggtaggaaatgatgtattgggaattttgagtggatggagtattattacttatatctttatctatttgaataaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
47583781 |
ccttgtttattttgtgtagattgtatcggtaggaaatgatgtattgggaattttgagtggatagagtattattacttatatc-ttatctatttgaataaa |
47583683 |
T |
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