View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_341 (Length: 241)
Name: NF8260A_low_341
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_341 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 13959903 - 13960140
Alignment:
| Q |
6 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagnnnnnnngtttatgtcaaacttacaccgatcaagtcgtagtcttagac |
105 |
Q |
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| T |
13959903 |
aagaatataggataaacaattgagttgatcgattttgagccacaaatatcagtttttttgtttatgtcaaacttacaccgatcaagtcatagtcttagac |
13960002 |
T |
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| Q |
106 |
gttacaagaaaaacta--aacttttactttcaatagtcaccgtcaatattaagggggtttttcttagaattttaaataaatgtgcgcgatgttaacctgc |
203 |
Q |
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| T |
13960003 |
gttacaagaaaaactataaacttttactttcaatagtcaacgtcaatattaaggtggtttttcgtagaattttaaataaatgtgggcgatgttaatctgg |
13960102 |
T |
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| Q |
204 |
attgcgacataatgattctttctgctgccaaaatcata |
241 |
Q |
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| T |
13960103 |
attgcgacataatgattctttatgctgccaaaatcata |
13960140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 13971421 - 13971599
Alignment:
| Q |
65 |
gtttatgtcaaacttacaccgatcaagtcgtagtcttagacgttacaagaaaaac--taaacttttactttcaatagtcaccgtcaatattaagggggtt |
162 |
Q |
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| T |
13971421 |
gtttatgtcaaacttacaccaatcaagtcataatcttagacgttacaagaaaaactataaacttttactttcaatagtcaatgtcaatattaaggttgtc |
13971520 |
T |
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| Q |
163 |
tttcttagaattttaaataaatgtgcgcgatgttaacctgcattgcgacataatgattctttctgctgccaaaatcata |
241 |
Q |
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| T |
13971521 |
tgtcatagaattttaaataaatttgggcgacaattatcaagattgcgacataatgattctttatgttgtcaaaatcata |
13971599 |
T |
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