View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_345 (Length: 240)
Name: NF8260A_low_345
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_345 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5172905 - 5173130
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
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||||||||||||||||||||||||| | | || ||||||||||||||||||||||| |||||| |||||||| |||| || || || |||||||||||| |
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| T |
5172905 |
aaattacatgcaaggatcattttcacttatcattttggctaatcactccaatcttcagcatctacatatttcatcgaaaaacagcactggagtacacatt |
5173004 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5173005 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
5173104 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgata |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5173105 |
ttctttcttatcaatataatttgata |
5173130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4842620 - 4842395
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||| | | || ||||||||||||||||||||||| ||||||||||||||| | || || |||| |||||||||||| |
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| T |
4842620 |
aaattacatgcaaggatcattttcacttatcaatttggctaatcactccaatcttcagcatctatatatttcatctaaaaacagtattggagtacacatt |
4842521 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
4842520 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtccctcattcttagaaattgcaacctaaacatgaagaaaggaagtgtcattcctactt |
4842421 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgata |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
4842420 |
ttctttcttatcaatataatttgata |
4842395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 5159989 - 5160213
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | ||||||||||||| | || || | || |||||| ||||| |
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| T |
5159989 |
aaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacatt |
5160088 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
5160089 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaggacaaaggaagtgtcattcctactt |
5160188 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgat |
225 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
5160189 |
ttctttcttatcaatacaatttgat |
5160213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 4857094 - 4856870
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||| | || ||| ||||| | |||| |
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|
| T |
4857094 |
aaattacatgcaaggatcattttcattgaccactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcatt |
4856998 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
4856997 |
gaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacatggacgaaggaagtgtcattcctactt |
4856898 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgatatt |
228 |
Q |
| |
|
||||||| ||||||||||||||| |||| |
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|
| T |
4856897 |
ttctttcatatcaatataatttggtatt |
4856870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 5182237 - 5182461
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||| | || ||| ||||| | |||| |
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|
| T |
5182237 |
aaattacatgcaaggatcattttcattgagcactttggctaatcactcaaatcttcagcatctatatatttcaccggaaaacagt---ggagttctcatt |
5182333 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |
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|
| T |
5182334 |
gaaactgaaaagacaaagtggtttcccaaatttcaattgaagacactcattcttagaaattgcaacctaaacaaggagaaaggaggtgtcattcctactt |
5182433 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgatatt |
228 |
Q |
| |
|
||||||| |||||||||||||||||||| |
|
|
| T |
5182434 |
ttctttcatatcaatataatttgatatt |
5182461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5195631 - 5195853
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| | ||||||||||||| | || || | || |||||| ||||| |
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|
| T |
5195631 |
aaattacatgcaaggatcattttcattgagcactttggctaatcattccaatcttgaggttctatatatttcatcaaaaaacaatattggagtagacatt |
5195730 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
5195731 |
gaaactgaaaaaacaaagtggtttcctaaatttcaattgaagtcacttattgttagaaattgcaacctaaacaaggacgaaggaagtgtcattcctactt |
5195830 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttg |
223 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
5195831 |
ttctttcatatcaatataatttg |
5195853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 5213797 - 5214022
Alignment:
| Q |
1 |
aaattacatgcaaggatcattttcattgaccaccttggctaatcactccaatcttcaacatctatatatttcaccgaacaatagtaccggagtacacatt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||| | |||| || | || | | ||||| |
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|
| T |
5213797 |
aaattacatgcaaggatcattttcattgagcactttggctaatcactccaatctccagcatctatatatttcatc--acaa-agcattggtgcaaacatt |
5213893 |
T |
|
| Q |
101 |
gaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtgtcattcctactt |
200 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
5213894 |
gaaactgaaaagacaaagtggttacccaaatttcaattgaagacactcattcttagaaattgcaacttaaacaaggacaaaggaagtgtcattcctactt |
5213993 |
T |
|
| Q |
201 |
ttctttcttatcaatataatttgatattg |
229 |
Q |
| |
|
||||||| |||||||||| |||||||||| |
|
|
| T |
5213994 |
ttctttcatatcaatatagtttgatattg |
5214022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 7142257 - 7142390
Alignment:
| Q |
89 |
ggagtacacattgaaactgaaaaaacaaaatggtttcctaaatttcaattgaagtcactcattcttagaaattgcaacctaaacaaagacaaaggaagtg |
188 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||||| ||||||| | | |||| || ||| ||||||||||| ||||| |||||||||| || |
|
|
| T |
7142257 |
ggagtacacgttgaaactgaaaatacaaagtggtttcctagatttcaactacatacacttatg-ttaaaaattgcaaccaaaacatggacaaaggaaatg |
7142355 |
T |
|
| Q |
189 |
tcattcctacttttctttcttatcaatataatttg |
223 |
Q |
| |
|
||||||||| |||| |||| |||||| |||||||| |
|
|
| T |
7142356 |
tcattcctagttttttttcatatcaacataatttg |
7142390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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