View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_347 (Length: 239)

Name: NF8260A_low_347
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_347
NF8260A_low_347
[»] chr1 (2 HSPs)
chr1 (12-239)||(36529325-36529552)
chr1 (87-156)||(15478122-15478191)
[»] chr4 (1 HSPs)
chr4 (87-159)||(2635058-2635130)
[»] chr6 (1 HSPs)
chr6 (87-156)||(5724751-5724820)
[»] chr8 (1 HSPs)
chr8 (85-156)||(39648266-39648337)
[»] chr5 (5 HSPs)
chr5 (87-153)||(15368138-15368204)
chr5 (115-159)||(35948149-35948193)
chr5 (85-156)||(39097157-39097228)
chr5 (118-159)||(11356054-11356095)
chr5 (118-159)||(11371299-11371340)
[»] chr2 (2 HSPs)
chr2 (77-156)||(43717227-43717306)
chr2 (87-155)||(4778448-4778516)
[»] chr3 (3 HSPs)
chr3 (87-156)||(7262793-7262862)
chr3 (91-155)||(21007763-21007827)
chr3 (87-159)||(38022332-38022404)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 36529325 - 36529552
Alignment:
Q  12 atgaacattagtgaaatgaacaaatttgcaagtggagtaaaaattaatacatgaacaccacttataaatttactatatgtttgatttcacttttagaggt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||| | |||||||||||||||||||||||||    
T  36529325 atgaacattagtgaaatgaacaaatttgcaagtggagtaaaaattaatacgttaataccacttataaatttaatgtatgtttgatttcacttttagaggt 36529424  T
Q  112 gccaaaattaattttagaaatgtagaattaattttgacatgtttgatttttatacaatatatgattgaatttgtcttcataattgattatattttaaact 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  36529425 gccaaaattaattttagaaatgtagaattaattttgacatgtttgatttttatacaatatatgattgattttgtcttcagaattgattatattttaaact 36529524  T
Q  212 ttaaataataacgttgattatgaaattg 239  Q
    ||||||||||||||||||||||||||||    
T  36529525 ttaaataataacgttgattatgaaattg 36529552  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 15478191 - 15478122
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    |||||||| || ||||||| |||| |||||| || |||||||   ||||||||| |||||||||||||||    
T  15478191 tatgtttggttccacttttggaggagccaaacttgattttagcggtgtagaattgattttgacatgtttg 15478122  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 2635058 - 2635130
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttgatt 159  Q
    |||||||| |||||||||||||||  |||||||| ||| ||||| |||| |||| ||||||||||||||||||    
T  2635058 tatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaattgattttgacatgtttgatt 2635130  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 156
Target Start/End: Complemental strand, 5724820 - 5724751
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    |||||||| || ||||| |||||| ||||||||||||| ||||| ||||||||| ||| |||||||||||    
T  5724820 tatgtttggttccacttctagaggggccaaaattaattctagaagtgtagaattgattctgacatgtttg 5724751  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 39648337 - 39648266
Alignment:
Q  85 tatatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    |||||||||| || |||||||||||| | ||||||| ||| |||| ||||| |||| |||||||||||||||    
T  39648337 tatatgtttggttacacttttagaggagtcaaaattgattctagagatgtataattgattttgacatgtttg 39648266  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 15368138 - 15368204
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgt 153  Q
    |||||||| || ||||||| |||| ||||||||| ||| |||| |||||||||| ||||||||||||    
T  15368138 tatgtttggttccacttttggaggagccaaaattgattctagatatgtagaattgattttgacatgt 15368204  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 35948193 - 35948149
Alignment:
Q  115 aaaattaattttagaaatgtagaattaattttgacatgtttgatt 159  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||    
T  35948193 aaaattcattttaaaaatgtaaaattaattttgacatgtttgatt 35948149  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 39097157 - 39097228
Alignment:
Q  85 tatatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    |||||||||| ||||||||||||||   || ||||| ||| ||||  ||||||||| |||||||||||||||    
T  39097157 tatatgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttgacatgtttg 39097228  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 11356054 - 11356095
Alignment:
Q  118 attaattttagaaatgtagaattaattttgacatgtttgatt 159  Q
    ||||||||||||| ||||| | ||||||||||||||||||||    
T  11356054 attaattttagaagtgtaggactaattttgacatgtttgatt 11356095  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 11371340 - 11371299
Alignment:
Q  118 attaattttagaaatgtagaattaattttgacatgtttgatt 159  Q
    ||||||||||||| ||||| | ||||||||||||||||||||    
T  11371340 attaattttagaagtgtaggactaattttgacatgtttgatt 11371299  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 156
Target Start/End: Original strand, 43717227 - 43717306
Alignment:
Q  77 aaatttactatatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    ||||| ||| || ||||| |||||||||| ||||||  |||||| ||| ||||  ||||||||| |||||||||||||||    
T  43717227 aaattaactgtacgtttggtttcacttttggaggtgttaaaattgattctagatgtgtagaattgattttgacatgtttg 43717306  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 4778448 - 4778516
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgttt 155  Q
    |||||||||||||| ||||  ||| | ||||||||||| ||||| ||||||||| || || ||||||||    
T  4778448 tatgtttgatttcatttttgaaggagtcaaaattaattctagaagtgtagaattgatgttaacatgttt 4778516  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 156
Target Start/End: Original strand, 7262793 - 7262862
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttg 156  Q
    |||||||| ||||||| ||||| | ||||||||| ||||||||  || |||||| ||| |||||||||||    
T  7262793 tatgtttggtttcactattagatgggccaaaattgattttagaggtgaagaattgattctgacatgtttg 7262862  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 21007827 - 21007763
Alignment:
Q  91 tttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgttt 155  Q
    |||| |||||||||| |||| ||||||||| |||||| | || || |||| ||||||||||||||    
T  21007827 tttggtttcacttttggaggagccaaaattgattttaaagatatataattgattttgacatgttt 21007763  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 38022332 - 38022404
Alignment:
Q  87 tatgtttgatttcacttttagaggtgccaaaattaattttagaaatgtagaattaattttgacatgtttgatt 159  Q
    |||||||| |||||||| |||| |  ||||| || ||| ||||| ||||||||| |||||| |||||||||||    
T  38022332 tatgtttggtttcacttctagaaggaccaaagttgattctagaagtgtagaattgattttggcatgtttgatt 38022404  T

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