View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_359 (Length: 238)
Name: NF8260A_low_359
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_359 |
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| [»] scaffold1030 (2 HSPs) |
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Alignment Details
Target: scaffold1030 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold1030
Description:
Target: scaffold1030; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 2136 - 2018
Alignment:
| Q |
90 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaacaattaaaaccaaccaaaacacctatagtagcacctaatgttctcttctcacaa |
189 |
Q |
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||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2136 |
ctaaacacctatcatatgctatttgtaccaaaaacctttaaaaaaacaattaaaaccaaccaaaacacctatagtagcacctaatgttctcttcgcacaa |
2037 |
T |
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| Q |
190 |
atgagaccaaataaacacc |
208 |
Q |
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||||||||||||||||||| |
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| T |
2036 |
atgagaccaaataaacacc |
2018 |
T |
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Target: scaffold1030; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 94
Target Start/End: Complemental strand, 2284 - 2252
Alignment:
| Q |
62 |
cccttacatctcctacatcaccacaccactaaa |
94 |
Q |
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| T |
2284 |
cccttacatctcctacatcacgacaccactaaa |
2252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 14279400 - 14279519
Alignment:
| Q |
90 |
ctaaacacctatcatatgctattcgtaccaaaaaccttttaagaaa-caattaaaaccaaccaaaacacctatagtagcacctaatgttctcttctcaca |
188 |
Q |
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||||||| ||||||||||||||||||| ||||||||||| || ||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
14279400 |
ctaaacagctatcatatgctattcgtatcaaaaacctttaaaaaaaacaattaaaaccgaccaaaacacctatactagcacctaatgttctcttcgcaca |
14279499 |
T |
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| Q |
189 |
aatgagaccaaataaacacc |
208 |
Q |
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| T |
14279500 |
aatgagaccaaataaacacc |
14279519 |
T |
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