View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_360 (Length: 237)
Name: NF8260A_low_360
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_360 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 35742820 - 35742596
Alignment:
| Q |
1 |
gatctcgaagatctcgaagatccagtaacttataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742820 |
gatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatcta |
35742721 |
T |
|
| Q |
101 |
atgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35742720 |
atgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgtgaaccacgaaac |
35742621 |
T |
|
| Q |
201 |
acatcccgatcaaatgctatatatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
35742620 |
acatcccgatcaaatgctatatatt |
35742596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 35749153 - 35748963
Alignment:
| Q |
33 |
taaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacac |
132 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| | |
|
|
| T |
35749153 |
taaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattc |
35749054 |
T |
|
| Q |
133 |
ctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatata |
223 |
Q |
| |
|
||| || |||||||||| | | ||| |||| |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||| |
|
|
| T |
35749053 |
ctcagtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University