View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_362 (Length: 237)

Name: NF8260A_low_362
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_362
NF8260A_low_362
[»] chr3 (21 HSPs)
chr3 (14-234)||(33399482-33399702)
chr3 (26-223)||(46992152-46992349)
chr3 (26-234)||(14399502-14399710)
chr3 (26-223)||(7841921-7842118)
chr3 (26-223)||(36816422-36816619)
chr3 (26-223)||(48249773-48249970)
chr3 (26-221)||(13746627-13746822)
chr3 (26-223)||(77926-78123)
chr3 (26-223)||(21955144-21955341)
chr3 (26-223)||(29930326-29930523)
chr3 (26-223)||(29979480-29979677)
chr3 (36-221)||(30946558-30946743)
chr3 (26-221)||(9428739-9428934)
chr3 (36-221)||(3949703-3949888)
chr3 (36-221)||(6741847-6742032)
chr3 (26-223)||(7838554-7838751)
chr3 (36-221)||(8159899-8160084)
chr3 (26-221)||(16445580-16445775)
chr3 (62-223)||(6504897-6505058)
chr3 (59-171)||(25059880-25059992)
chr3 (78-221)||(50954233-50954376)
[»] chr1 (24 HSPs)
chr1 (26-234)||(26466176-26466384)
chr1 (1-234)||(32106524-32106754)
chr1 (26-207)||(25231276-25231457)
chr1 (26-234)||(16246660-16246865)
chr1 (26-223)||(21943270-21943467)
chr1 (26-223)||(50116669-50116866)
chr1 (26-234)||(7980118-7980326)
chr1 (26-234)||(38691845-38692053)
chr1 (36-234)||(46974111-46974309)
chr1 (26-223)||(37015872-37016069)
chr1 (26-223)||(51663216-51663413)
chr1 (37-132)||(5078984-5079079)
chr1 (26-221)||(29355594-29355789)
chr1 (26-221)||(41454797-41454992)
chr1 (36-221)||(20350416-20350601)
chr1 (26-221)||(44620009-44620204)
chr1 (36-221)||(3947377-3947562)
chr1 (36-221)||(3984073-3984258)
chr1 (36-221)||(38775031-38775216)
chr1 (36-221)||(44466542-44466727)
chr1 (26-170)||(13174792-13174936)
chr1 (26-221)||(13630376-13630571)
chr1 (36-116)||(39914002-39914082)
chr1 (26-132)||(12649485-12649589)
[»] chr5 (19 HSPs)
chr5 (12-225)||(20285965-20286178)
chr5 (26-207)||(23028466-23028654)
chr5 (64-216)||(13157978-13158130)
chr5 (40-234)||(20286455-20286650)
chr5 (26-223)||(18537242-18537439)
chr5 (26-132)||(7020786-7020892)
chr5 (26-223)||(25896007-25896204)
chr5 (36-223)||(1035466-1035653)
chr5 (26-132)||(27866751-27866857)
chr5 (26-132)||(34078829-34078935)
chr5 (26-223)||(7799912-7800109)
chr5 (26-195)||(13567008-13567177)
chr5 (26-170)||(4202845-4202989)
chr5 (26-221)||(11032358-11032553)
chr5 (26-221)||(37819783-37819978)
chr5 (26-221)||(38859096-38859291)
chr5 (26-116)||(28885314-28885404)
chr5 (26-108)||(1036424-1036506)
chr5 (26-107)||(25048472-25048553)
[»] chr4 (15 HSPs)
chr4 (28-204)||(6182653-6182829)
chr4 (26-223)||(18580234-18580431)
chr4 (26-223)||(4976713-4976910)
chr4 (26-221)||(9890982-9891177)
chr4 (26-124)||(19072563-19072661)
chr4 (26-223)||(4978860-4979057)
chr4 (26-223)||(21471752-21471949)
chr4 (29-133)||(4769178-4769282)
chr4 (26-170)||(11502517-11502661)
chr4 (26-132)||(3404839-3404945)
chr4 (26-132)||(41024248-41024354)
chr4 (36-221)||(49565380-49565565)
chr4 (26-223)||(51643404-51643603)
chr4 (148-223)||(17140547-17140622)
chr4 (26-104)||(38463743-38463821)
[»] chr2 (21 HSPs)
chr2 (12-224)||(17997064-17997276)
chr2 (26-223)||(12907398-12907595)
chr2 (26-223)||(41007886-41008083)
chr2 (26-200)||(436292-436466)
chr2 (26-223)||(11692720-11692917)
chr2 (26-223)||(43949188-43949385)
chr2 (26-221)||(7263992-7264187)
chr2 (26-132)||(3802472-3802578)
chr2 (26-132)||(27275266-27275372)
chr2 (26-223)||(28354808-28355005)
chr2 (36-221)||(212357-212542)
chr2 (36-221)||(10623370-10623555)
chr2 (26-223)||(24604995-24605192)
chr2 (26-223)||(24750616-24750813)
chr2 (36-132)||(5348216-5348312)
chr2 (36-132)||(41561061-41561157)
chr2 (36-132)||(45476407-45476503)
chr2 (26-132)||(34920688-34920794)
chr2 (26-221)||(39794930-39795125)
chr2 (36-221)||(38946723-38946908)
chr2 (150-223)||(34920802-34920875)
[»] chr7 (15 HSPs)
chr7 (26-223)||(8400544-8400741)
chr7 (26-234)||(43827512-43827720)
chr7 (26-223)||(47061841-47062038)
chr7 (37-234)||(21799959-21800156)
chr7 (26-221)||(18106348-18106543)
chr7 (36-221)||(617665-617850)
chr7 (36-221)||(30787499-30787684)
chr7 (36-221)||(43623051-43623236)
chr7 (36-221)||(45764339-45764524)
chr7 (36-171)||(20908433-20908568)
chr7 (26-132)||(15060662-15060768)
chr7 (62-221)||(42500367-42500526)
chr7 (26-122)||(3761964-3762060)
chr7 (26-107)||(16794519-16794600)
chr7 (26-116)||(8194186-8194276)
[»] chr8 (15 HSPs)
chr8 (26-223)||(7168858-7169055)
chr8 (26-223)||(35965651-35965848)
chr8 (36-170)||(22580914-22581048)
chr8 (26-223)||(39751934-39752131)
chr8 (26-223)||(45455334-45455531)
chr8 (26-171)||(14401678-14401825)
chr8 (26-223)||(43370725-43370922)
chr8 (26-223)||(43689077-43689274)
chr8 (36-221)||(7341039-7341224)
chr8 (36-221)||(8422772-8422957)
chr8 (36-221)||(30304526-30304711)
chr8 (36-221)||(32377824-32378009)
chr8 (36-221)||(32431781-32431966)
chr8 (36-132)||(1115821-1115917)
chr8 (78-200)||(2145948-2146070)
[»] scaffold0219 (1 HSPs)
scaffold0219 (26-223)||(17027-17224)
[»] chr6 (12 HSPs)
chr6 (26-223)||(18606954-18607151)
chr6 (26-219)||(24220128-24220323)
chr6 (26-221)||(28250856-28251051)
chr6 (61-170)||(31147333-31147442)
chr6 (61-223)||(7362137-7362299)
chr6 (26-200)||(29287854-29288028)
chr6 (36-221)||(1611667-1611852)
chr6 (26-132)||(21358253-21358359)
chr6 (26-132)||(23962235-23962341)
chr6 (56-171)||(34111598-34111713)
chr6 (148-223)||(35243561-35243636)
chr6 (148-221)||(13387722-13387795)
[»] scaffold0341 (1 HSPs)
scaffold0341 (26-132)||(16263-16369)
[»] scaffold0494 (1 HSPs)
scaffold0494 (26-221)||(1841-2036)
[»] scaffold0116 (1 HSPs)
scaffold0116 (26-223)||(12220-12417)
[»] scaffold0101 (1 HSPs)
scaffold0101 (36-221)||(33769-33954)
[»] scaffold0340 (1 HSPs)
scaffold0340 (61-223)||(111-273)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 234
Target Start/End: Complemental strand, 33399702 - 33399482
Alignment:
Q  14 gtcttttgggcgtcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgc 113  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33399702 gtcttttggtcttcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacgtacaagcttcttgccatcctcctttaatctacccgc 33399603  T
Q  114 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  33399602 aagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgcttgcctactaagatatccacga 33399503  T
Q  214 accatgaacatacacctacat 234  Q
    |||||||||||||||||||||    
T  33399502 accatgaacatacacctacat 33399482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 46992152 - 46992349
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || ||||| |||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  46992152 tcaaatgtatcaaaaaatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 46992251  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  46992252 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 46992349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 14399710 - 14399502
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| |||||| |||||||||||| ||||| |||||||     
T  14399710 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatccttctttaatctaccggcaagaatgtgtcc 14399611  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    |||||||    | | |||  | ||||||||||||||||| ||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| |    
T  14399610 ttctaaagccggctccatggcatggttgtgaactccatttagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaa 14399511  T
Q  226 cacctacat 234  Q
    |||| ||||    
T  14399510 cacccacat 14399502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 7841921 - 7842118
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||||     
T  7841921 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacaggcaagaatgtgtcc 7842020  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7842021 ttctaaagccggcttcatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaaca 7842118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 36816422 - 36816619
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  36816422 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 36816521  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  36816522 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 36816619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 48249773 - 48249970
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||  ||||||| | ||||||||||||||||| ||||| |||||||     
T  48249773 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacagtcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 48249872  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    || ||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  48249873 ttataaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 48249970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 13746627 - 13746822
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  13746627 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 13746726  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13746727 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13746822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 77926 - 78123
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||||  |||||||     
T  77926 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcaataatgtgtcc 78025  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | ||||   ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  78026 ttctaaagccggctccatcaaatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 78123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 21955144 - 21955341
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||  |||||||     
T  21955144 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaataatgtgtcc 21955243  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||| |    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || ||||||||    
T  21955244 ttctagagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttacttactttgatatccactaatcatgaaca 21955341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 29930523 - 29930326
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |||| |||||||     
T  29930523 tcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtgtcc 29930424  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  29930423 ttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 29930326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 29979677 - 29979480
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||| | ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||||||||  |||| |||||||     
T  29979677 tcaaatgtatcaaaatatgtcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccgccaagaatgtgtcc 29979578  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    |   |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  29979577 ttctaaagccggcatcatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 29979480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 30946558 - 30946743
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||||| |||||||       
T  30946558 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcatcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30946657  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30946658 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30946743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 9428739 - 9428934
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  9428739 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 9428838  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9428839 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9428934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 3949888 - 3949703
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  3949888 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3949789  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3949788 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 6742032 - 6741847
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  6742032 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 6741933  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  6741932 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 6741847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 7838751 - 7838554
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | |||||||||| |||||| | ||| |||||||     
T  7838751 tcaaatgtatcaaaatatttcttggaagcatattgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggaaagaatgtgtcc 7838652  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||| ||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7838651 ttctaaagccggctccatcgcatggttgtgaactccactaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 7838554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 8159899 - 8160084
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  8159899 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 8159998  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8159999 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8160084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 16445775 - 16445580
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||||     
T  16445775 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtgtcc 16445676  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  16445675 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 16445580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 223
Target Start/End: Original strand, 6504897 - 6505058
Alignment:
Q  62 tcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactcc 161  Q
    ||||||||||||||  ||||| ||||||  | |||||||||| |||||| ||||| ||||||| |||||||    | | |||| | ||||||||||||||    
T  6504897 tcttggtcaagtcatgtacaatcttcttttcgtcctcctttagtctaccggcaagaatgtgtcattctaaagccggctccatcgcatggttgtgaactcc 6504996  T
Q  162 attaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  6504997 attaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 6505058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 171
Target Start/End: Original strand, 25059880 - 25059992
Alignment:
Q  59 aactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaac 158  Q
    ||||||||||||||||||||| || || |||| | |||| | |||||||  ||||||| ||||| | | |||||  | || ||||||  |||||||||||    
T  25059880 aactcttggtcaagtcacatataatctccttgtcgtccttcattaatctttccgcaagaatgtgccctgctaaatatggtaacatcttatggttgtgaac 25059979  T
Q  159 tccattaagaata 171  Q
     ||||||||||||    
T  25059980 accattaagaata 25059992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 50954376 - 50954233
Alignment:
Q  78 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 177  Q
    ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    | | |||    ||||||||||||||||||||||| || |||    
T  50954376 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaat 50954277  T
Q  178 ctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    | | | || ||||||||| ||||  ||||| ||| || ||||||    
T  50954276 ccccattcctttgtttgcttactttgatatccactaatcatgaa 50954233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 26466176 - 26466384
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||||||||||||||||| |||||||||||  | ||||||||||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||     
T  26466176 tcaaatttaacaaaatatttcttggaagcaccttagtcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacccgcaagcatgtgtca 26466275  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    |||||||    | | |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||    
T  26466276 ttctaaagccggctccatctcatggttgtgaactccattaagaatgtttaatctccaatcatttgtttgcctactaagatatccacgaacaatgaacata 26466375  T
Q  226 cacctacat 234  Q
    |||||||||    
T  26466376 cacctacat 26466384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32106524 - 32106754
Alignment:
Q  1 gtcttgtaattttgtcttttgggcgtcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcct 100  Q
    |||||| ||| ||||||||||  | |||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||| ||| ||| |||||    
T  32106524 gtcttgcaatcttgtcttttgctcttcaaatttaacaac-tattttttcaaagcaccaaactcttggtcaagtcacatacaagctttttgtcattctcct 32106622  T
Q  101 ttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 200  Q
    |||||||||| |||| |||||||| |||||||||| | | |||||| || ||||||||||  ||||||||||| |||||| |||||||||||| ||| ||    
T  32106623 ttaatctaccagcaatcatgtgtccttctaaacttggctccatctcatgattgtgaactc--ttaagaatattcaatctccaatcatttgtttaccttct 32106720  T
Q  201 aagatattcacgaaccatgaacatacacctacat 234  Q
    ||||||| |||||||||||||||| |||| ||||    
T  32106721 aagatatccacgaaccatgaacattcacccacat 32106754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 25231457 - 25231276
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||||||||||||||||| ||  |||||||||||  ||||||||||||| ||||| |||||||  ||||||| || ||||||| |||||||||||||     
T  25231457 tcaaatttaacaaaatatttgttaaaagcaccaaacatttggtcaagtcacgtacaatcttcttggtatcctcccttgatctacctgcaagcatgtgtcc 25231358  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 207  Q
    ||| |||||| | | | ||||  |||||||||||||||| | |||||| |||||| | |||||||||| |||||||| ||||    
T  25231357 ttccaaacttggcttcgtctcacggttgtgaactccattgaaaatattcaatctccagtcatttgtttccctactaatatat 25231276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 16246660 - 16246865
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    ||||||||||||||||||| || ||| |||||   || ||||| ||||||| ||||| ||||||| ||||||| ||||||||||| | |||||||||||     
T  16246660 tcaaatttaacaaaatattctt-ggatgcaccttgcttttggt-aagtcacgtacaatcttcttgtcatcctcttttaatctaccggtaagcatgtgtcc 16246757  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    ||||||| |  | | |||| | |||||||||||| |||||| ||| || |||||| | ||||||||||||||||  |||||||||| |||||||||||||    
T  16246758 ttctaaagtcggctccatcgcatggttgtgaacttcattaacaat-ttcaatctccattcatttgtttgcctacacagatattcactaaccatgaacata 16246856  T
Q  226 cacctacat 234  Q
    |||| ||||    
T  16246857 cacccacat 16246865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 21943270 - 21943467
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    ||||||||| |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||||     
T  21943270 tcaaatttatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtcc 21943369  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||||   | | |||| | ||||||||||||||||| ||||| || |||| | | || ||||||||||||||  ||||| ||| |||||| ||||    
T  21943370 ttctaaacccggctccatcccatggttgtgaactccattgagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccataaaca 21943467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 50116669 - 50116866
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| | ||||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  50116669 tcaaatgtatcaaaatatttcttggaagcatctaactcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 50116768  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | |||| |||||||||||||||||| || |||||| | || ||| ||||| ||||  ||||| ||| || ||||||||    
T  50116769 ttctaaagccggctccatcgcatggtagtgaactccattaagaatgttcaatctccattcctttatttgcttactttgatatccactaatcatgaaca 50116866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 7980118 - 7980326
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| |||||||     
T  7980118 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtgtcc 7980217  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    |||||||      | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| |    
T  7980218 ttctaaagccgactgcattgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaa 7980317  T
Q  226 cacctacat 234  Q
    |||| ||||    
T  7980318 cacccacat 7980326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 38691845 - 38692053
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| | |||||     
T  38691845 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggcaagaacgtgtcc 38691944  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| |    
T  38691945 ttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaa 38692044  T
Q  226 cacctacat 234  Q
    |||| ||||    
T  38692045 cacccacat 38692053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 234
Target Start/End: Complemental strand, 46974309 - 46974111
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| ||||| ||||||| ||||||| |     
T  46974309 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatgtaccggcaagaatgtgtccttctaaagtc 46974210  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacat 234  Q
     | | |||| | ||||||| ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || |||||||| ||||| ||||    
T  46974209 ggctccatcgcatggttgtaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaacaaacacccacat 46974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 37016069 - 37015872
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  37016069 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgcacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 37015970  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  37015969 ttctaaagccagctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 37015872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 51663413 - 51663216
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||| | ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  51663413 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcgcgtacaatcttcttgtcctcctcctttaatctaccagcaagaatgtgtca 51663314  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||| ||||||||||||| || |||| | | || ||||||||| ||||  ||||||||| || ||||||||    
T  51663313 ttctaaagccggcttcatcgcatggttgtgagctccattaagaatgttcaatccccattcttttgtttgcttactttgatattcactaatcatgaaca 51663216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 5079079 - 5078984
Alignment:
Q  37 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 132  Q
    ||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||| ||||||| |||||||    
T  5079079 aaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5078984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 29355594 - 29355789
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  29355594 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 29355693  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  29355694 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 29355789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 41454992 - 41454797
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  41454992 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 41454893  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  41454892 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 41454797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 20350601 - 20350416
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  20350601 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 20350502  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  20350501 ggctccatgggatggttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 20350416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 44620009 - 44620204
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  44620009 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 44620108  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44620109 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44620204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 3947377 - 3947562
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  3947377 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3947476  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3947477 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3947562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 3984258 - 3984073
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  3984258 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 3984159  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  3984158 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 3984073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 38775031 - 38775216
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  38775031 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 38775130  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38775131 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38775216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 44466727 - 44466542
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  44466727 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 44466628  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  44466627 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 44466542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 13174936 - 13174792
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||||||||||||||  |||| ||||||| | ||||||||||||||||| || || |||||||     
T  13174936 tcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgaacaatcttcttgtcgtcctcctttaatctaccagcgagaatgtgtcc 13174837  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaat 170  Q
    | |||||    | | |||| | |||||||||||||||||||||||    
T  13174836 tcctaaagccggctccatcgcatggttgtgaactccattaagaat 13174792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 13630571 - 13630376
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| | ||| |||||||     
T  13630571 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggaaagaatgtgtcc 13630472  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  13630471 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 13630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 39914082 - 39914002
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 116  Q
    ||||||||||||| |  |||||||||||||||||||||||| ||||| ||||||| |||||| | ||||||| | ||||||    
T  39914082 caaaatatttttttgttgcaccaaactcttggtcaagtcacgtacaatcttcttgtcatccttcattaatcttctcgcaag 39914002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 12649485 - 12649589
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | | |||  ||||| |||| ||||| |||||||     
T  12649485 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtgctc--ttaatttaccggcaagaatgtgtcc 12649582  T
Q  126 ttctaaa 132  Q
    |||||||    
T  12649583 ttctaaa 12649589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 20286178 - 20285965
Alignment:
Q  12 ttgtcttttgggcgtcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctaccc 111  Q
    ||||||||||  | |||||||||||||||||||| |||||||||||  ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  20286178 ttgtcttttgctcttcaaatttaacaaaatatttcttggaagcaccttactcttggttaagtcacatacaatcttcttgtcatcctcctttaatctaccc 20286079  T
Q  112 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 211  Q
    ||||||||||||| |||||||    | | |||| | ||||||||||||||||||||||| || | | || | |||||||||||||||||||||||| |||    
T  20286078 gcaagcatgtgtccttctaaagccggctccatcacatggttgtgaactccattaagaatgttcagtttccattcatttgtttgcctactaagatatccac 20285979  T
Q  212 gaaccatgaacata 225  Q
      ||||||||||||    
T  20285978 ttaccatgaacata 20285965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 23028466 - 23028654
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcaca-------tacaagcttcttgccatcctcctttaatctacccgcaagca 118  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||        ||||| ||||||| |||||||| ||||||||||||||||||    
T  23028466 tcaaatttaataaaatattttttgaaagcatcaaactcttggtcaagtcaccaatcatgtacaatcttcttgtcatcctcccttaatctacccgcaagca 23028565  T
Q  119 tgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatat 207  Q
    |||||  ||||||||||   | |||||| ||||||||||||||||||| |||||| |||||| |||||||||||| |||||||||||||    
T  23028566 tgtgttcttctaaacttgccttcatctcatggttgtgaactccattaataatattcaatctccaatcatttgtttccctactaagatat 23028654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 13157978 - 13158130
Alignment:
Q  64 ttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccat 163  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| || |||| ||   | ||| || ||||||||||||||||    
T  13157978 ttggtgaagtcacatacaagtttcttgtcatcctcctttaatctacccgcaagcatgcgtccttttaaatttgactccatttcatggttgtgaactccat 13158077  T
Q  164 taagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaacc 216  Q
    ||||||| || |||||| |||||||||||||| || |||||||| ||||||||    
T  13158078 taagaatgttcaatctccaatcatttgtttgcttattaagatatccacgaacc 13158130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 234
Target Start/End: Complemental strand, 20286650 - 20286455
Alignment:
Q  40 atattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgtt 139  Q
    |||||| ||||| |||||  ||||||||||||||||  ||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||    | |    
T  20286650 atatttcttggatgcaccttactcttggtcaagtcatgtacaatctttttgtcatcctcctttaatctacccgcaagcatgtgtccttctaaagccggct 20286551  T
Q  140 acatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac-gaaccatgaacatacacctacat 234  Q
     |||| | ||||||| ||||||||||||||| || |   || | |||||||||||||||||||||||| |||  | ||||||||||||||| ||||    
T  20286550 ccatcacatggttgtaaactccattaagaatgttcaggttccattcatttgtttgcctactaagatatccacttacccatgaacatacacccacat 20286455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 18537242 - 18537439
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |  ||||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  18537242 tcaaatgtatcaaaatatttcttggaagcatctcactcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 18537341  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||  | | |  ||| | ||||||||||||||||||||||| || |||| | | || ||||||| | ||||  ||||| ||| || ||||||||    
T  18537342 ttctaaagctggctcaatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgttttcttactttgatatccactaatcatgaaca 18537439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 7020786 - 7020892
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  7020786 tcaaatgtatcaaaatatttcttggaagcatcttcctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 7020885  T
Q  126 ttctaaa 132  Q
    |||||||    
T  7020886 ttctaaa 7020892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 25896007 - 25896204
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  25896007 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 25896106  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  25896107 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 25896204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 1035466 - 1035653
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  1035466 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1035565  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
     | | |||  | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  1035566 ggctccatggcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 1035653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 27866751 - 27866857
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  27866751 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 27866850  T
Q  126 ttctaaa 132  Q
    |||||||    
T  27866851 ttctaaa 27866857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 34078935 - 34078829
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  34078935 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 34078836  T
Q  126 ttctaaa 132  Q
    |||||||    
T  34078835 ttctaaa 34078829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 7799912 - 7800109
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| ||||||  |||| |||||||     
T  7799912 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccgacaagaatgtgtcc 7800011  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||  | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7800012 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaattcccattcctttgtttgcttactttgatatccactaatcatgaaca 7800109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 13567008 - 13567177
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||| |||||||||||| ||||| |||||||     
T  13567008 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtccttctttaatctaccggcaagaatgtgtcc 13567107  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgc 195  Q
    |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || |||||||||    
T  13567108 ttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgc 13567177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 4202845 - 4202989
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||  ||||||||| |   |||||| ||||||||| ||||| ||||||| | ||||||||||||||||| |||||  ||||||     
T  4202845 tcaaatgtatcaaaatattacttggaagcatcttgctcttgatcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagagtgtgtcc 4202944  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaat 170  Q
    |||||||    | | |||| | |||||||||||||||||||||||    
T  4202945 ttctaaagccggctccatcgcatggttgtgaactccattaagaat 4202989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 11032358 - 11032553
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  11032358 tcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtca 11032457  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  11032458 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 11032553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 37819783 - 37819978
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||  |||||||     
T  37819783 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaacaatgtgtcc 37819882  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  37819883 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 37819978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 221
Target Start/End: Original strand, 38859096 - 38859291
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |    | || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  38859096 tcaaatgtatcaaaatatttcttggaagcatcttgttttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 38859195  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  38859196 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatctccattcttttgtttgcttactttgatatccactaatcatgaa 38859291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 28885314 - 28885404
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 116  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| |||||    
T  28885314 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaag 28885404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 1036506 - 1036424
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatcta 108  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||||||||    
T  1036506 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatattcttgtcgtcctcctttaatcta 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 25048553 - 25048472
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 107  Q
    ||||||||| ||||||||||| |||   || | |||| |||||||||||| |||||| ||||||| | |||||| |||||||    
T  25048553 tcaaatttatcaaaatattttatggtttcaacgaactattggtcaagtcatatacaatcttcttgtcgtcctccattaatct 25048472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 6182829 - 6182653
Alignment:
Q  28 aaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtcttt 127  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  |||||  |||||| || | ||| ||||| |||  |||||||| |||| ||    
T  6182829 aaatttaacaaaatattttttgaaagcaccaaactcttggtcaagtcatgtacaattttcttgtcaccatcccttaatatacttgcaagcatatgtcctt 6182730  T
Q  128 ctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaaga 204  Q
    |||||||| | | |||||| |||||||||||||||| ||||||||| |||||| |||| ||||||| ||||||||||    
T  6182729 ctaaacttggcttcatctcatggttgtgaactccatcaagaatattcaatctccaatcgtttgtttccctactaaga 6182653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 18580234 - 18580431
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||||||| | ||||||||||||||| | ||||| |||||||     
T  18580234 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtca 18580333  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||  | ||||||||||||||||||||||| |||||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  18580334 ttctaaagccggcttcattgcatggttgtgaactccattaagaatgtttaatcctcattcctttgtttgcttactttgatatccactaatcatgaaca 18580431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 4976910 - 4976713
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||||    
T  4976910 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtct 4976811  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||  ||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  4976810 ttctaaagccggctccatcgcatggttgcaaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 4976713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 9891177 - 9890982
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  9891177 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 9891078  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  9891077 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 9890982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 19072563 - 19072661
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtc 124  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||    
T  19072563 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtc 19072661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 4978860 - 4979057
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || ||||||| ||| |  ||||| |||||||     
T  4978860 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcatcctttagtctgctggcaagaatgtgtcc 4978959  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||| |  | | |||| | |||||| |||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  4978960 ttctaaagtcggctccatcgcatggttgggaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 4979057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 21471949 - 21471752
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||| |  |||| ||||||||    
T  21471949 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttattctatcttcaagaatgtgtct 21471850  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    || |||| ||   | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  21471849 ttttaaagttgtctccattgtatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 21471752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 4769282 - 4769178
Alignment:
Q  29 aatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttc 128  Q
    |||||| |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| | ||| ||||||| |||    
T  4769282 aatttatcaaaatatttcttgaaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggtaagaatgtgtccttc 4769183  T
Q  129 taaac 133  Q
    |||||    
T  4769182 taaac 4769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 11502661 - 11502517
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | || |||||||||||||| ||| | |||||||     
T  11502661 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcttcctttaatctaccggcatgaatgtgtcc 11502562  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaat 170  Q
    |||||||    | | |||| | ||| |||||||||||||||||||    
T  11502561 ttctaaagccggctccatcgcatgggtgtgaactccattaagaat 11502517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 3404945 - 3404839
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||||     
T  3404945 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtgtcc 3404846  T
Q  126 ttctaaa 132  Q
    |||||||    
T  3404845 ttctaaa 3404839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 41024354 - 41024248
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||  | ||||||||||||||||| ||||| |||||||     
T  41024354 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttttcgtcctcctttaatctacctgcaagaatgtgtcc 41024255  T
Q  126 ttctaaa 132  Q
    |||||||    
T  41024254 ttctaaa 41024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 49565380 - 49565565
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||| | ||||| ||||||| |||||||       
T  49565380 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtccttctaaagcc 49565479  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  49565480 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 49565565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 51643404 - 51643603
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||||||| |||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||  ||||| |||||||     
T  51643404 tcaaatgtatcaaaatattttttgaaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctactggcaagaatgtgtcc 51643503  T
Q  126 ttctaaa-cttcgttacatctcttggttgtg-aactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    || |||| |   | | |||| | || ||||| ||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  51643504 ttataaagccgggctccatcgcatgtttgtgaaactccattaagaatgttcaatctcaattcctttgtttgcttactttgatatccactaatcatgaaca 51643603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 17140622 - 17140547
Alignment:
Q  148 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |||||||||||    
T  17140622 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcctactttgatatccactaaccatgaaca 17140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 38463743 - 38463821
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaa 104  Q
    |||||| || |||||||||||||||||||| |   |||||||||||||||| | ||| ||||||| | |||||||||||    
T  38463743 tcaaatgtatcaaaatattttttggaagcatcttgctcttggtcaagtcacgtgcaatcttcttgtcgtcctcctttaa 38463821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 12 - 224
Target Start/End: Original strand, 17997064 - 17997276
Alignment:
Q  12 ttgtcttttgggcgtcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctaccc 111  Q
    ||||||||||  | ||||||||| |||||||||| |||||||||||   |||||||||||||||| ||||| ||||||  |||||||||||||||||||     
T  17997064 ttgtcttttgctcttcaaatttatcaaaatatttcttggaagcaccttgctcttggtcaagtcacgtacaatcttcttatcatcctcctttaatctacca 17997163  T
Q  112 gcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcac 211  Q
    ||||||||||||| |||||||    | | |||| | |||||| ||||| ||| |||||| || |||||| | || |||||||| |||||||||||| |||    
T  17997164 gcaagcatgtgtccttctaaagccggctccatcgcatggttgcgaacttcatgaagaatgttcaatctccattcctttgtttgtctactaagatatccac 17997263  T
Q  212 gaaccatgaacat 224  Q
     |||| |||||||    
T  17997264 taaccttgaacat 17997276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 12907398 - 12907595
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || || ||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  12907398 tcaaatgtatcagaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 12907497  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  12907498 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaaca 12907595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 41007886 - 41008083
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  41007886 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtca 41007985  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | |||||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  41007986 ttctaaagccggctacatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaaca 41008083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 436466 - 436292
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  436466 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 436367  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 200  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  436366 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 436292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 11692720 - 11692917
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  11692720 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 11692819  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||| |  | |  ||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  11692820 ttctaaagtcggctcgatcacatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaaca 11692917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 43949188 - 43949385
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||||| ||||||||||||||||| ||||| |||||||     
T  43949188 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgccgtcctcctttaatctaccggcaagaatgtgtcc 43949287  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | | || | ||||||||||||||||||| ||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  43949288 ttctaaagccggctccttcgcatggttgtgaactccattaataatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 43949385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 7264187 - 7263992
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| |||||| || |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  7264187 tcaaatgtatcaaaatatttcttggaaccatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 7264088  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    ||| |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7264087 ttctaaagccggttccatgagatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7263992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 3802472 - 3802578
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  3802472 tcaaatgtatcaaaatatttattggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 3802571  T
Q  126 ttctaaa 132  Q
    |||||||    
T  3802572 ttctaaa 3802578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 27275266 - 27275372
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  27275266 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 27275365  T
Q  126 ttctaaa 132  Q
    |||||||    
T  27275366 ttctaaa 27275372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 28354808 - 28355005
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||| |||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||||     
T  28354808 tcaaatgtatcaaaatatttcttggaagcatcttgctcatggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccagcaagaatgtgtca 28354907  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  28354908 ttctaaagcaggctccatcgcatggttatgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 28355005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 212357 - 212542
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  212357 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 212456  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  212457 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 212542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 10623370 - 10623555
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  10623370 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 10623469  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  10623470 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 10623555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 24604995 - 24605192
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| |||||  |||||| | |||||||||| ||||||  |||| ||||||      
T  24604995 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaattttcttgtcgtcctcctttagtctaccgacaagaatgtgtac 24605094  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  24605095 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 24605192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 24750813 - 24750616
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||| |||||| |||  ||||| ||||||| ||||||||||||||||||| ||||| |||||||     
T  24750813 tcaaatgtatcaaaatatttcttggaagcatcttgctctcggtcaattcatgtacaatcttcttgtcatcctcctttaatctaccggcaagaatgtgtcc 24750714  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  24750713 ttctaaatccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 24750616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 5348312 - 5348216
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 132  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  5348312 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 5348216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 41561157 - 41561061
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 132  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  41561157 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 41561061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 45476503 - 45476407
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 132  Q
    |||||||||| ||| ||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  45476503 caaaatatttcttgtaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 45476407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 34920688 - 34920794
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||||| |||| | ||| |||||||     
T  34920688 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatttaccggtaagaatgtgtcc 34920787  T
Q  126 ttctaaa 132  Q
    |||||||    
T  34920788 ttctaaa 34920794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 39795125 - 39794930
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   || || |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||| |     
T  39795125 tcaaatgtatcaaaatatttcttggaagcatcttgctttttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgccc 39795026  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  39795025 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcttttgtttgcttactttgatatccactaatcatgaa 39794930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 38946908 - 38946723
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    ||||||||||  |||||||| |   |||||||||||||||| ||| | |||||||   ||||||||||||||||| ||||| ||||||| |||||||       
T  38946908 caaaatatttcatggaagcatcttgctcttggtcaagtcacgtacgatcttcttgttgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 38946809  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  38946808 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 38946723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 223
Target Start/End: Original strand, 34920802 - 34920875
Alignment:
Q  150 gttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||||||||||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||||    
T  34920802 gttgtgaactccattaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaaca 34920875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 8400741 - 8400544
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    ||||||||| ||||||||||||||| | || |   |||||||||||||||| ||||| ||||||| |||||||||||||| |||| ||||| |||||||     
T  8400741 tcaaatttatcaaaatattttttggtaacatcttgctcttggtcaagtcacctacaatcttcttgtcatcctcctttaatgtaccagcaagaatgtgtcc 8400642  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||| | ||| || |||| | | || ||||||||||||||||||||| ||| |||||||||||    
T  8400641 ttctaaagccggctccatcgcatggttgtgaactccattgaaaatgttcaatccccattcttttgtttgcctactaagatatccactaaccatgaaca 8400544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 43827512 - 43827720
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    ||||||||| |||||||||| ||||||||| |   | |||||||||||||| ||||| ||||||  | ||||||||||||||||| | ||| |||||||     
T  43827512 tcaaatttatcaaaatatttcttggaagcatcttgcacttggtcaagtcacgtacaatcttcttttcgtcctcctttaatctaccggtaagaatgtgtca 43827611  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacata 225  Q
    |||||||  | | | | || | ||||||||||||||||||||||| || |||| | | || |||||||| |||||||||||| ||| ||||||||||| |    
T  43827612 ttctaaagctggctccttcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgtctactaagatatccactaaccatgaacaaa 43827711  T
Q  226 cacctacat 234  Q
    |||| ||||    
T  43827712 cacccacat 43827720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 47062038 - 47061841
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||||||||| ||| ||| | ||||||||||||||||| ||||| |||||||     
T  47062038 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacatacaatctttttgtcgtcctcctttaatctaccggcaagaatgtgtcc 47061939  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||| ||| |  | | |||| | ||||||||||||||||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  47061938 ttcaaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatcctcattcctttgtttgcttactttgatatccactaatcatgaaca 47061841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 37 - 234
Target Start/End: Complemental strand, 21800156 - 21799959
Alignment:
Q  37 aaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttc 136  Q
    ||||||||||||||| |||||   |||||| | ||||||| || ||  ||||||  ||||||||||||||||||  ||| |||||||| |||||||        
T  21800156 aaaatattttttggatgcaccttgctcttgattaagtcacgtataattttcttgttatcctcctttaatctaccgacaaacatgtgtccttctaaagccg 21800057  T
Q  137 gttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaacatacacctacat 234  Q
      | |||| | ||||||||||||||||||| ||| || |||||| | |  ||||||| ||||||||||||| ||| |||||||||||| |||| ||||    
T  21800056 actccatcgcatggttgtgaactccattaacaatgttcaatctccattgctttgttttcctactaagatatccactaaccatgaacatgcacccacat 21799959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 18106543 - 18106348
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  18106543 tcaaatgtatcaaaatatttcttggaagcatcttgctctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctacctgcaagaatgtgtcc 18106444  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  18106443 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 18106348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 617665 - 617850
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  617665 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 617764  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  617765 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 617850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 30787684 - 30787499
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  30787684 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30787585  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30787584 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30787499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 43623051 - 43623236
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  43623051 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 43623150  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  43623151 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 43623236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 45764524 - 45764339
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  45764524 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagcc 45764425  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  45764424 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 45764339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 171
Target Start/End: Original strand, 20908433 - 20908568
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    ||||||||||||| |  |||||||||||||||| |||||||  |||| ||||||| |||||||| ||||||| || ||||| ||||| | ||||||  ||    
T  20908433 caaaatatttttttgttgcaccaaactcttggtaaagtcacgcacaatcttcttgtcatcctcccttaatcttcctgcaagaatgtgcccttctaacatt 20908532  T
Q  136 cgttacatctcttggttgtgaactccattaagaata 171  Q
         | |||| ||||||||||||||||||||||||    
T  20908533 gccgtcgtctcatggttgtgaactccattaagaata 20908568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 15060768 - 15060662
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||  ||||||||| |   ||||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  15060768 tcaaatgtatcaaaatattccttggaagcatcttgctctttgtcaagtcacttacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 15060669  T
Q  126 ttctaaa 132  Q
    |||||||    
T  15060668 ttctaaa 15060662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 42500526 - 42500367
Alignment:
Q  62 tcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactcc 161  Q
    |||| |||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||| || |||||||    | | |||    ||||||||||||||    
T  42500526 tctttgtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtttccttctaaagccggctccatgggatggttgtgaactcc 42500427  T
Q  162 attaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    ||||||||| || |||||| | || ||||||||| ||||  ||||| ||| || ||||||    
T  42500426 attaagaatgttcaatctccattcctttgtttgcttactttgatatccactaatcatgaa 42500367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 3762060 - 3761964
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtg 122  Q
    ||||||| | |||||||||||||||  ||| ||||||||||||||||| || || || ||| ||| |||| ||| ||||||| ||| ||||||||||    
T  3762060 tcaaattcatcaaaatattttttggctgcatcaaactcttggtcaagttacctagaatctttttgtcatcttcccttaatcttccctcaagcatgtg 3761964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 16794519 - 16794600
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatct 107  Q
    ||||||||  |||||||||||||||   ||||||||| ||||||||||||  ||||| ||||||| | |||||| |||||||    
T  16794519 tcaaatttgtcaaaatattttttggtttcaccaaactattggtcaagtcatgtacaatcttcttgtcgtcctccattaatct 16794600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 8194186 - 8194276
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaag 116  Q
    ||||||||  |||||||||||||||   |||| |||| ||| ||||||||  ||||| ||||||| | |||||| ||||||| ||||||||    
T  8194186 tcaaatttgtcaaaatattttttggtttcaccgaactattgctcaagtcatgtacaatcttcttgtcgtcctccattaatcttcccgcaag 8194276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 7169055 - 7168858
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| | ||||| | ||||||||||||||||  ||||| |||| ||     
T  7169055 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcatcttgtcgtcctcctttaatctactagcaagaatgtatcc 7168956  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||||||||  ||||| ||| |||||||||||    
T  7168955 ttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccactcctttgtttgcctactttgatatccactaaccatgaaca 7168858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 35965651 - 35965848
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  35965651 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 35965750  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  35965751 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 35965848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 22581048 - 22580914
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| ||||||| ||||||| |     
T  22581048 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagtc 22580949  T
Q  136 cgttacatctcttggttgtgaactccattaagaat 170  Q
     | | |||| | ||||||| |||||||||||||||    
T  22580948 ggctccatcgcatggttgtaaactccattaagaat 22580914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 39751934 - 39752131
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| |||   || ||||     
T  39751934 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcataaatatgtca 39752033  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    ||| |||  | ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||    
T  39752034 ttctaaagccggttccattgcatggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccaccaatcatgaaca 39752131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 45455531 - 45455334
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| |||||||||     |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  45455531 tcaaatgtatcaaaatatttcttggaagcattttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 45455432  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||| |  | | |||| | ||||||| ||||||||||||||| |  |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  45455431 ttctaaagtcggctccatcgcatggttgttaactccattaagaatgtccaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 45455334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 14401678 - 14401825
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcaca--tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgt 123  Q
    ||||||| | |||||||||||||||  ||||||||||||||||||||||| |  ||||| ||||||| |||| ||| ||||||| || ||||| |||||     
T  14401678 tcaaattcatcaaaatattttttggtggcaccaaactcttggtcaagtcatatgtacaatcttcttgtcatcatcccttaatcttcctgcaagaatgtgc 14401777  T
Q  124 ctttctaaacttcgttacatctcttggttgtgaactccattaagaata 171  Q
    | |||||||||| |   ||  || ||||||||||||||||||||||||    
T  14401778 cattctaaacttggcaccaattcatggttgtgaactccattaagaata 14401825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 43370922 - 43370725
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||||     
T  43370922 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcc 43370823  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||      | |||| | ||||||||||||||||||||||| || || | | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  43370822 ttctaaagccgactccatcgcatggttgtgaactccattaagaatgttcaaaccccattcctttgtttgcttactttgatatccactaatcatgaaca 43370725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 43689077 - 43689274
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| || |||||| |   |||||||||||||||| ||||| ||||||| | ||||| ||||||||||| ||||| |||||||     
T  43689077 tcaaatgtatcaaaatatttcttcgaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcttttaatctaccggcaagaatgtgtcc 43689176  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  43689177 ttctaaagccgactccatcgcatggttgtgaactccattaagaatgttaaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 43689274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 7341224 - 7341039
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  7341224 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 7341125  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  7341124 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 7341039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 8422772 - 8422957
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  8422772 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcattctaaagcc 8422871  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    | ||||||||||||||||||||| ||||||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  8422872 ggctccatgggatagttgtgaactccattaagaatgtttaatccccattcctttgtttgcttactttgatatccactaatcatgaa 8422957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 30304526 - 30304711
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  30304526 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 30304625  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  30304626 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 30304711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 32377824 - 32378009
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  32377824 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 32377923  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32377924 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 32431781 - 32431966
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  32431781 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 32431880  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  32431881 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 32431966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 1115917 - 1115821
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaa 132  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||    
T  1115917 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtactatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaa 1115821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 2145948 - 2146070
Alignment:
Q  78 tacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaat 177  Q
    ||||| ||||||| | ||||||||||||||||| ||||| || |||| ||||||| |  | | |||| | ||||||||||||||||||| ||| || |||    
T  2145948 tacaatcttcttgtcgtcctcctttaatctaccggcaagaatatgtccttctaaagtcggctccatcgcatggttgtgaactccattaaaaatgttcaat 2146047  T
Q  178 ctcgaatcatttgtttgcctact 200  Q
    ||| | |||||||||||| ||||    
T  2146048 ctccattcatttgtttgcttact 2146070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 17224 - 17027
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||||     
T  17224 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacttacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcc 17125  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  17124 ttctaaagccggctccatcgcatggttgtgaactccattaagaatgttcaatccctattcctttgtttgcttactttgatatccactaatcatgaaca 17027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 18607151 - 18606954
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| |  |||| |||||||     
T  18607151 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcgacaagaatgtgtcc 18607052  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||| |  | | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  18607051 ttctaaagtcggctccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 18606954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 219
Target Start/End: Complemental strand, 24220323 - 24220128
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaa--ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgt 123  Q
    ||||||||| |||||||||| ||||||||| |  |  |||||||||||||||| || ||  |||||| | |||||||||||||||||  |||| ||||||    
T  24220323 tcaaatttatcaaaatatttcttggaagcatcttatgctcttggtcaagtcacgtataattttcttgtcgtcctcctttaatctaccgacaagaatgtgt 24220224  T
Q  124 ctttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatg 219  Q
    | |||||||      | |||| | |||||||||||| |||||||||| || |||| | | |||||||||| ||||||||||||| ||| |||||||    
T  24220223 ccttctaaagccgactccatcgcatggttgtgaactgcattaagaattttcaatccccattcatttgttttcctactaagatatccactaaccatg 24220128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 28251051 - 28250856
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||| | ||||| |||||||     
T  28251051 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtcc 28250952  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||  | | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  28250951 ttctaaagctggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 28250856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 61 - 170
Target Start/End: Complemental strand, 31147442 - 31147333
Alignment:
Q  61 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 160  Q
    |||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| ||||| ||||||| ||||||| |  | | |||| | |||||||||||||    
T  31147442 ctcttgatcaagtcacgtacaatcttcttgtcattctcctttaatctaccggcaagaatgtgtccttctaaagtcggctccatcgcatggttgtgaactc 31147343  T
Q  161 cattaagaat 170  Q
    ||||||||||    
T  31147342 cattaagaat 31147333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 7362299 - 7362137
Alignment:
Q  61 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 160  Q
    |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| ||||||| ||||||| |    | |||| | |||||||||||||    
T  7362299 ctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcattctaaagtcgactccatcgcatggttgtgaactc 7362200  T
Q  161 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||||| || ||||   | || ||||||||| ||||  ||||| ||| || ||||||||    
T  7362199 cattaagaatgttcaatccacattcctttgtttgcttactttgatatccactaatcatgaaca 7362137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 29287854 - 29288028
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||||||| |||||| ||||| |||||||     
T  29287854 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcgtcctcctttagtctaccggcaagaatgtgtcc 29287953  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctact 200  Q
    || ||||      | |||| | ||||||||||||||||||||||| || |||| | | || ||||||||| ||||    
T  29287954 ttataaagccgactccatcgcatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttact 29288028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Original strand, 1611667 - 1611852
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  1611667 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 1611766  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1611767 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1611852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 21358253 - 21358359
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||||     
T  21358253 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtcc 21358352  T
Q  126 ttctaaa 132  Q
    |||||||    
T  21358353 ttctaaa 21358359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 23962235 - 23962341
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||  ||||| ||||||| | ||||||||||||||| | ||||| |||||||     
T  23962235 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcatgtacaatcttcttgtcgtcctcctttaatctatcggcaagaatgtgtcc 23962334  T
Q  126 ttctaaa 132  Q
    |||||||    
T  23962335 ttctaaa 23962341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 34111598 - 34111713
Alignment:
Q  56 ccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtg 155  Q
    ||||||||||||||||||||| ||||| ||||| | |||| ||||||||||| || ||||| || |  | ||||||  || |   |||||| ||||||||    
T  34111598 ccaaactcttggtcaagtcacgtacaatcttctagtcatcttcctttaatcttcctgcaagaattttcccttctaactttggcgccatctcatggttgtg 34111697  T
Q  156 aactccattaagaata 171  Q
    ||||||||||||||||    
T  34111698 aactccattaagaata 34111713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 35243636 - 35243561
Alignment:
Q  148 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    ||||||||||||||||||||||| || |||| | | |||||||||||| ||||  ||||| ||| || ||||||||    
T  35243636 tggttgtgaactccattaagaatgttcaatccccattcatttgtttgcttactttgatatccactaatcatgaaca 35243561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 13387722 - 13387795
Alignment:
Q  148 tggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| |||||| ||||||    
T  13387722 tggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccacgaatcatgaa 13387795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 16263 - 16369
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | ||||||||||||||||| ||||| |||||||     
T  16263 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacaatcttcttgtcttcctcctttaatctaccggcaagaatgtgtcc 16362  T
Q  126 ttctaaa 132  Q
    |||||||    
T  16363 ttctaaa 16369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 2036 - 1841
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| |||||||     
T  2036 tcaaatgtatcaaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtcc 1937  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
    |||||||    | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  1936 ttctaaagccggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 1841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 12417 - 12220
Alignment:
Q  26 tcaaatttaacaaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtct 125  Q
    |||||| || |||||||||| ||||||||| |   |||||||||||||||| ||||| ||||||| | |||||| |||||||||| | ||| |||||||     
T  12417 tcaaatgtatcaaaatatttcttggaagcatctttctcttggtcaagtcacgtacaatcttcttgtcgtcctccattaatctaccggaaagaatgtgtcc 12318  T
Q  126 ttctaaacttcgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||    | | |||  | ||||| ||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  12317 ttctaaagccagctccatggcatggttttgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaaca 12220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 221
Target Start/End: Complemental strand, 33954 - 33769
Alignment:
Q  36 caaaatattttttggaagcaccaaactcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaactt 135  Q
    |||||||||| ||||||||| |   |||||||||||||||| ||| | ||||||| | ||||||||||||||||| ||||| ||||||| |||||||       
T  33954 caaaatatttcttggaagcatcttgctcttggtcaagtcacgtacgatcttcttgtcgtcctcctttaatctaccggcaagaatgtgtccttctaaagcc 33855  T
Q  136 cgttacatctcttggttgtgaactccattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaa 221  Q
     | | |||    ||||||||||||||||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||    
T  33854 ggctccatgggatggttgtgaactccattaagaatgttcaatccccattcctttgtttgcttactttgatatccactaatcatgaa 33769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 111 - 273
Alignment:
Q  61 ctcttggtcaagtcacatacaagcttcttgccatcctcctttaatctacccgcaagcatgtgtctttctaaacttcgttacatctcttggttgtgaactc 160  Q
    |||||||||||||||| ||||| ||||||| | | |||||||| ||||| || ||| ||||||| |||||||    | | |||| | |||||||||||||    
T  111 ctcttggtcaagtcacgtacaatcttcttgtcgttctcctttagtctactcgtaagaatgtgtccttctaaagccggctccatcgcatggttgtgaactc 210  T
Q  161 cattaagaatatttaatctcgaatcatttgtttgcctactaagatattcacgaaccatgaaca 223  Q
    |||||||||| || |||| | | || ||||||||| ||||  ||||| ||| || ||||||||    
T  211 cattaagaatgttcaatcaccattcctttgtttgcttactttgatatccactaatcatgaaca 273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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