View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_364 (Length: 236)
Name: NF8260A_low_364
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_364 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 20816525 - 20816290
Alignment:
| Q |
1 |
agccaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccc |
100 |
Q |
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| T |
20816525 |
agccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccc |
20816426 |
T |
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| Q |
101 |
tctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccc |
200 |
Q |
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| T |
20816425 |
tctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccc |
20816326 |
T |
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| Q |
201 |
cccgaattgaaacttcattggatattcttcgacatg |
236 |
Q |
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| T |
20816325 |
cccgaattgcaacttcattggatattttgcgacatg |
20816290 |
T |
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Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 38779624 - 38779821
Alignment:
| Q |
5 |
aatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctc |
104 |
Q |
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|||||||| |||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38779624 |
aatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctcct |
38779723 |
T |
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| Q |
105 |
taactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
202 |
Q |
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| T |
38779724 |
taactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtccccc |
38779821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 33388583 - 33388771
Alignment:
| Q |
5 |
aatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctc |
104 |
Q |
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||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
33388583 |
aatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctcct |
33388682 |
T |
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| Q |
105 |
taactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
193 |
Q |
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|||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388683 |
taactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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