View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_367 (Length: 236)
Name: NF8260A_low_367
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_367 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0945 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 24546007 - 24546227
Alignment:
| Q |
15 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacac |
114 |
Q |
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| T |
24546007 |
tataattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatttgagtctactctaaattgaagcaaacac |
24546106 |
T |
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| Q |
115 |
tatggaattaccggtccaaataaaagaagcattcatgggtttgtagaaagaacgaaaacagaagcaattatggcaatgccatttatatcataatagagag |
214 |
Q |
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| T |
24546107 |
tatggaattaccagtccaaa-aaaagaagcattcatgggtttgtagaaagaacgaaaaaagaagcaatgatggccatgtcatttatatcataatagagag |
24546205 |
T |
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| Q |
215 |
cttaattttgtaatgtaattag |
236 |
Q |
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| T |
24546206 |
cttaattttgtaatataattag |
24546227 |
T |
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Target: scaffold0945 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0945
Description:
Target: scaffold0945; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 855 - 722
Alignment:
| Q |
17 |
taattgaagtgtaaaaccaataagaggctcttcagcctaatcttaaagatgaagtcaatctttgttaatctgagtctactctaaattgaagcaaacacta |
116 |
Q |
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||||||||| ||||||| ||||||| || || || | |||||||||||||||||||||||| | ||| |||||||| |||||||||||||||| |
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| T |
855 |
taattgaagcataaaacctataagagact-ttaagtccaatcttaaagatgaagtcaatcttact-aatttgagtcta-----aattgaagcaaacactt |
763 |
T |
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| Q |
117 |
tggaattaccg-gtccaaataaaagaagcattcatgggttt |
156 |
Q |
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| T |
762 |
tggaatgaccaagtccaaataaaagaagcattcatgggttt |
722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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