View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_369 (Length: 235)
Name: NF8260A_low_369
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_369 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 35 - 219
Target Start/End: Complemental strand, 6073749 - 6073565
Alignment:
| Q |
35 |
acttccatcctcctcgccggaatctctccctatcaaacctccccgttcgtccgactttgcctacaccgccatccgcaaatccggcctcaccttccgtgac |
134 |
Q |
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| T |
6073749 |
acttccatcctcctcgccggaatctctctccatcaaacctcatcgttcctccgacttcgcctacaccgccatccgcaaatccggcctcaccttccgtgac |
6073650 |
T |
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| Q |
135 |
ttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctccgcaaatgaactcc |
219 |
Q |
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| T |
6073649 |
ttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctcctcaaatgaactcc |
6073565 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 193
Target Start/End: Original strand, 37170052 - 37170181
Alignment:
| Q |
67 |
tcaaacctccccgttcgtccgactttgcctacaccgccatccg---caaatccggcctcaccttccgtgacttccatctcctccgccgtataggcgccgg |
163 |
Q |
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||||||||| ||| || |||||||| || ||| |||||||||| ||| |||| ||||| || ||||||||||| |||||||||||||| |||||||| |
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| T |
37170052 |
tcaaacctcaccgctcctccgacttcgcttactccgccatccgtcgcaagtccgctctcacatttcgtgacttccacctcctccgccgtatcggcgccgg |
37170151 |
T |
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| Q |
164 |
cgacataggcaccgtttacctctgtcgcct |
193 |
Q |
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|| || || || |||||||| || ||||| |
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| T |
37170152 |
agatatcggtactgtttacctatgccgcct |
37170181 |
T |
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