View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_37 (Length: 429)
Name: NF8260A_low_37
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 9 - 405
Target Start/End: Original strand, 4968753 - 4969162
Alignment:
| Q |
9 |
agcagagagatgattgagagagagaaa-gaaatatatatcattctgacggtgtaacataacatcattcatccgacgattcaaataacttgtccatcgtga |
107 |
Q |
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| T |
4968753 |
agcaaagagatgattgagagagagaaaagaaatatatatcattctgatggtgtaacataacatcatttatcggacgattcaaataacttgtccatcgtga |
4968852 |
T |
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| Q |
108 |
gagacttgcttcacttgcccaccctagcatccgcgccaagttcactttgttttgaaacataacttctttc----------aattctttgtaatttcaatt |
197 |
Q |
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| T |
4968853 |
gagacttgcttcacttgcccaccctagcatcggcgccaagttcactttgttttgaaacataacttctttcggttcagttcaattctttgtaatttcaatt |
4968952 |
T |
|
| Q |
198 |
cctcatgtttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacataccatcacacacataaggtttttcagatta |
297 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4968953 |
cctcatatttaacatccaaatcgttgaacatttctttaaaccaaaacattttccaaaactatcaatacacaccatcacacacataaggtttttcagatta |
4969052 |
T |
|
| Q |
298 |
tc--ataacttgtcttgtctaagattcaatattcgtaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatc |
395 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4969053 |
tcagataacttgtcttgtctaagattcaatattcacaatgattaaataatcttttgatgttggtttggtgcacttcacaattaaccaatttttcgagatc |
4969152 |
T |
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| Q |
396 |
aaagaacaac |
405 |
Q |
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| T |
4969153 |
aaagaacaac |
4969162 |
T |
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