View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_378 (Length: 232)

Name: NF8260A_low_378
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_378
NF8260A_low_378
[»] chr4 (6 HSPs)
chr4 (18-214)||(34635869-34636065)
chr4 (124-157)||(6821045-6821078)
chr4 (124-157)||(19728782-19728815)
chr4 (125-157)||(17418299-17418331)
chr4 (127-157)||(3576628-3576658)
chr4 (125-157)||(18557649-18557681)
[»] chr6 (9 HSPs)
chr6 (63-212)||(24621935-24622083)
chr6 (103-157)||(7848049-7848103)
chr6 (108-157)||(22396767-22396816)
chr6 (125-157)||(14745278-14745310)
chr6 (125-155)||(31473698-31473728)
chr6 (125-157)||(19548074-19548106)
chr6 (125-157)||(27122155-27122187)
chr6 (103-155)||(31494902-31494954)
chr6 (103-155)||(31500288-31500340)
[»] chr7 (2 HSPs)
chr7 (118-214)||(41743857-41743952)
chr7 (125-157)||(16074828-16074860)
[»] scaffold1043 (1 HSPs)
scaffold1043 (125-157)||(1762-1794)
[»] scaffold0094 (1 HSPs)
scaffold0094 (125-157)||(5424-5456)
[»] scaffold0010 (1 HSPs)
scaffold0010 (125-157)||(141932-141964)
[»] chr8 (1 HSPs)
chr8 (125-157)||(17862581-17862613)
[»] chr2 (6 HSPs)
chr2 (122-154)||(18988136-18988168)
chr2 (125-157)||(23247572-23247604)
chr2 (131-166)||(16858381-16858416)
chr2 (183-214)||(18785434-18785465)
chr2 (125-154)||(35922772-35922801)
chr2 (125-157)||(23907462-23907494)
[»] scaffold0290 (1 HSPs)
scaffold0290 (122-157)||(14828-14863)
[»] scaffold0170 (1 HSPs)
scaffold0170 (127-157)||(16926-16956)
[»] scaffold0061 (1 HSPs)
scaffold0061 (125-157)||(18451-18483)
[»] chr5 (1 HSPs)
chr5 (121-157)||(13935344-13935380)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 34636065 - 34635869
Alignment:
Q  18 acatcaggaagtatttccgtctcaatagtttgtacaatcatcgtctcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636065 acatcaggaagtatttccgtctcaatagtttgtacaatcatcgtctcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatata 34635966  T
Q  118 gacttcatcctaagacctatatgaatgtggtaccacaccttttcgtcatcattattgtttgtcagagatgtgttactggacttacattcgtcttcat 214  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34635965 gacttcatcctaagacctatataaatgtggtaccacaccttttcgtcatcattattgtttgtcagagatgtgttactggacttacattcgtcttcat 34635869  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 6821045 - 6821078
Alignment:
Q  124 atcctaagacctatatgaatgtggtaccacacct 157  Q
    ||||||||||||||||||||||||||||||||||    
T  6821045 atcctaagacctatatgaatgtggtaccacacct 6821078  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 19728815 - 19728782
Alignment:
Q  124 atcctaagacctatatgaatgtggtaccacacct 157  Q
    ||||||||||||||||||||||||||||||||||    
T  19728815 atcctaagacctatatgaatgtggtaccacacct 19728782  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 17418299 - 17418331
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  17418299 tcctaagacctatatgaatgtggtaccacacct 17418331  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 3576658 - 3576628
Alignment:
Q  127 ctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||    
T  3576658 ctaagacctatatgaatgtggtaccacacct 3576628  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 18557681 - 18557649
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||| ||||    
T  18557681 tcctaagacctatatgaatgtggtaccatacct 18557649  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 212
Target Start/End: Original strand, 24621935 - 24622083
Alignment:
Q  63 tcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacaccttttcg 162  Q
    ||||||||||||| ||   ||||||||||||||||||| |  || |||| |||| |||| ||||||| ||| ||||||||||| |||||||||| | |||    
T  24621935 tcacaccatttcacaaataacaccaagtacaaacatcatcgcttatatgcatattgactccatcctatgacatatatgaatgtagtaccacacc-tatcg 24622033  T
Q  163 tcatcattattgtttgtcagagatgtgttactggacttacattcgtcttc 212  Q
    ||||||| | |  ||||||||||| |||||||||| ||||| ||||||||    
T  24622034 tcatcataaattgttgtcagagatatgttactggatttacactcgtcttc 24622083  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 7848049 - 7848103
Alignment:
Q  103 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacacct 157  Q
    |||| |||| ||||| |||  ||||||||||||||||||||||||||||||||||    
T  7848049 atttttatgcatataaactcaatcctaagacctatatgaatgtggtaccacacct 7848103  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 22396816 - 22396767
Alignment:
Q  108 tatgtatatagacttcatcctaagacctatatgaatgtggtaccacacct 157  Q
    |||| |||| |||||  |||||||||||||||||||||||||||||||||    
T  22396816 tatgcatatggacttagtcctaagacctatatgaatgtggtaccacacct 22396767  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 14745278 - 14745310
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  14745278 tcctaagacctatatgaatgtggtaccacacct 14745310  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 155
Target Start/End: Complemental strand, 31473728 - 31473698
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacac 155  Q
    |||||||||||||||||||||||||||||||    
T  31473728 tcctaagacctatatgaatgtggtaccacac 31473698  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 19548106 - 19548074
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||| ||||    
T  19548106 tcctaagacctatatgaatgtggtaccatacct 19548074  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 27122187 - 27122155
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||| ||||    
T  27122187 tcctaagacctatatgaatgtggtaccatacct 27122155  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 31494954 - 31494902
Alignment:
Q  103 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacac 155  Q
    ||||||||| |||| ||||   |||||||| ||||||||||||||||||||||    
T  31494954 atttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 31494902  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 31500340 - 31500288
Alignment:
Q  103 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacac 155  Q
    ||||||||| |||| ||||   |||||||| ||||||||||||||||||||||    
T  31500340 atttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 31500288  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 41743857 - 41743952
Alignment:
Q  118 gacttcatcctaagacctatatgaatgtggtaccacaccttttcgtcatcat-tattgtttgtcagagatgtgttactggacttacattcgtcttcat 214  Q
    ||||||||| |||||| |||||||| |||||| ||||| | | ||||||||| |||||||  | ||||||||||||||||||||||||| ||||||||    
T  41743857 gacttcatcttaagacatatatgaacgtggtatcacacatat-cgtcatcatatattgttgat-agagatgtgttactggacttacatttgtcttcat 41743952  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 16074860 - 16074828
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||| ||||||||||||||||    
T  16074860 tcctaagacctatatgcatgtggtaccacacct 16074828  T

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Target: scaffold1043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 1794 - 1762
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  1794 tcctaagacctatatgaatgtggtaccacacct 1762  T

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Target: scaffold0094 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 5456 - 5424
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  5456 tcctaagacctatatgaatgtggtaccacacct 5424  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 141932 - 141964
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  141932 tcctaagacctatatgaatgtggtaccacacct 141964  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 17862613 - 17862581
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  17862613 tcctaagacctatatgaatgtggtaccacacct 17862581  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Complemental strand, 18988168 - 18988136
Alignment:
Q  122 tcatcctaagacctatatgaatgtggtaccaca 154  Q
    |||||||||||||||||||||||||||||||||    
T  18988168 tcatcctaagacctatatgaatgtggtaccaca 18988136  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 23247604 - 23247572
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||||    
T  23247604 tcctaagacctatatgaatgtggtaccacacct 23247572  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 16858381 - 16858416
Alignment:
Q  131 gacctatatgaatgtggtaccacaccttttcgtcat 166  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16858381 gacctatatgaatgtggtaccacacctattcgtcat 16858416  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 214
Target Start/End: Complemental strand, 18785465 - 18785434
Alignment:
Q  183 agatgtgttactggacttacattcgtcttcat 214  Q
    ||||||||||||||||||||||||||||||||    
T  18785465 agatgtgttactggacttacattcgtcttcat 18785434  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 35922801 - 35922772
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccaca 154  Q
    ||||||||||||||||||||||||||||||    
T  35922801 tcctaagacctatatgaatgtggtaccaca 35922772  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 23907462 - 23907494
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    ||||||||||||||||||||| |||||||||||    
T  23907462 tcctaagacctatatgaatgtagtaccacacct 23907494  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 14863 - 14828
Alignment:
Q  122 tcatcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||| |||||||||||    
T  14863 tcatcctaagacctatatgaatgttgtaccacacct 14828  T

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Target: scaffold0170 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Original strand, 16926 - 16956
Alignment:
Q  127 ctaagacctatatgaatgtggtaccacacct 157  Q
    |||||||||||||||||||||||||||||||    
T  16926 ctaagacctatatgaatgtggtaccacacct 16956  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 18483 - 18451
Alignment:
Q  125 tcctaagacctatatgaatgtggtaccacacct 157  Q
    ||||||||||||||||||||| |||||||||||    
T  18483 tcctaagacctatatgaatgtcgtaccacacct 18451  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 13935344 - 13935380
Alignment:
Q  121 ttcatcctaagacctatatgaatgtggtaccacacct 157  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  13935344 ttcatcgtaagatctatatgaatgtggtaccacacct 13935380  T

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