View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_387 (Length: 230)
Name: NF8260A_low_387
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_387 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 410384 - 410160
Alignment:
| Q |
1 |
gagaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatgagactaattccacaccaacagcacgtgctctatcagctggagcataa |
100 |
Q |
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| T |
410384 |
gagaggcatgtgaagtgagatgaaatcagcggttgtgattgcttgatcaaatgaaactaattccacaccaacagcacgtgctctatcagctggagcataa |
410285 |
T |
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| Q |
101 |
gggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgctaatgttttcccaacca |
200 |
Q |
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| T |
410284 |
gggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaaccccattattgctaatgttttcccaacca |
410185 |
T |
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| Q |
201 |
tagatactcccacatacttgcttct |
225 |
Q |
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|||||||||| |||||||||||||| |
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| T |
410184 |
tagatactccaacatacttgcttct |
410160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 225
Target Start/End: Complemental strand, 48785548 - 48785408
Alignment:
| Q |
85 |
atcagctggagcataagggtcatgagcaatcacattcattcctaatccttttgcacgccttgcaacttcagatccaacttttccaaatcccattattgct |
184 |
Q |
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|||||| ||||||||||| ||||||||||| || ||||| || | || || |||||||| ||||| |||| |||||| || ||||||||||||| || |
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| T |
48785548 |
atcagcaggagcataaggatcatgagcaataaccttcataccaagccccttagcacgcctagcaacctcagttccaaccttcccaaatcccattacagca |
48785449 |
T |
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| Q |
185 |
aatgttttcccaaccatagatactcccacatacttgcttct |
225 |
Q |
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| T |
48785448 |
agtgtcttcccaactagggaaactccaacatacttacttct |
48785408 |
T |
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