View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_391 (Length: 230)
Name: NF8260A_low_391
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_391 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32045658 - 32045834
Alignment:
| Q |
1 |
aatctttgtttaattacttaatttaacaaagtaattacacataaaactaacttatcctaacacatttgttgtccccaagtagttgatacacacaatagca |
100 |
Q |
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| T |
32045658 |
aatctttatttaattacttaatttaacaaagtaattacacataaaactaacttatcctaacacatttgttgtcccca-----------cacacaatagca |
32045746 |
T |
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| Q |
101 |
tacaattttcttttatatcttcctgaatttccacagtaataatcaataatttatgatgaggctttagtaaactatcgtccaaaacata |
188 |
Q |
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| T |
32045747 |
tacaattttcttttatatcttcctgaatttccacagtaataatcaataatttatgacgaggttttagtaaactatcgtccaaaacata |
32045834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 32046132 - 32046170
Alignment:
| Q |
187 |
tatataactgctctaagaatctctttctcccgagattct |
225 |
Q |
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| T |
32046132 |
tatataactactctaagaatctctttctcccgagattct |
32046170 |
T |
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