View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_402 (Length: 230)
Name: NF8260A_low_402
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_402 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3352261 - 3352485
Alignment:
| Q |
1 |
aatcactgcaatagcatcgcaactgtaattgttatccatgactataggcgagggtgccatataannnnnnnaaaggtctctcgtagcatcgcaattgcgg |
100 |
Q |
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|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||||||||||| |||||||| |
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| T |
3352261 |
aatctctgcaataacatcgcaactgtaattgttgtccatgactataggcgagggtgccatagaattttttga--ggtctctcgtagcatcgaaattgcgg |
3352358 |
T |
|
| Q |
101 |
ctacatagtcgcatttgcgactacgtacattagtcgcatttgccagcattttactgcaatataaaagcttagaacataattgcaact------gcgaccg |
194 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
3352359 |
ctacatagtcacatttgcggctac----attagtcgcatttgccagcattttaccgcaatataaaagcttagaacataattgcaactgcgaccgcgaccg |
3352454 |
T |
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| Q |
195 |
caatttaaaatcatggtatgtataaagcttt |
225 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3352455 |
caatttaaaatcatggtatgtataaagcttt |
3352485 |
T |
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