View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_406 (Length: 230)

Name: NF8260A_low_406
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_406
NF8260A_low_406
[»] chr1 (4 HSPs)
chr1 (22-211)||(18438563-18438749)
chr1 (22-211)||(18449421-18449607)
chr1 (22-211)||(18454514-18454700)
chr1 (123-174)||(42080703-42080754)
[»] chr2 (5 HSPs)
chr2 (22-211)||(31320217-31320417)
chr2 (31-184)||(9446963-9447127)
chr2 (123-181)||(21949909-21949967)
chr2 (123-171)||(14555896-14555944)
chr2 (123-183)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (31-191)||(31610025-31610196)
chr5 (122-177)||(11888191-11888246)
chr5 (123-174)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (123-171)||(8425057-8425105)
chr7 (123-174)||(49094557-49094608)
chr7 (31-183)||(30559271-30559434)
chr7 (123-174)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (122-174)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (123-174)||(2048991-2049042)
chr4 (123-174)||(39735820-39735871)
chr4 (123-172)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (123-171)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (124-169)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (123-183)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 18438749 - 18438563
Alignment:
Q  22 ctatcccaataagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 121  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18438749 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18438653  T
Q  122 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18438652 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18438563  T

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Target: chr1; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 18449607 - 18449421
Alignment:
Q  22 ctatcccaataagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 121  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18449607 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18449511  T
Q  122 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18449510 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18449421  T

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Target: chr1; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 18454700 - 18454514
Alignment:
Q  22 ctatcccaataagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 121  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18454700 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18454604  T
Q  122 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18454603 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18454514  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 31320417 - 31320217
Alignment:
Q  22 ctatcccaataagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 121  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31320417 ctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatc 31320318  T
Q  122 a-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactctt 210  Q
    |           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||    
T  31320317 acatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctcttttactctt 31320218  T
Q  211 c 211  Q
    |    
T  31320217 c 31320217  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 184
Target Start/End: Complemental strand, 9447127 - 9446963
Alignment:
Q  31 taagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca-------- 122  Q
    ||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||            
T  9447127 taagatagattcagccaccatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatatt 9447028  T
Q  123 ---gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgc 184  Q
       |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447027 tgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 181  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 171  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 183  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

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Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 31610196 - 31610025
Alignment:
Q  31 taagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc--------- 121  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||             
T  31610196 taagatagattcagcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatatatt 31610097  T
Q  122 --agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 191  Q
       ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610096 tgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  122 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 177  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 171  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 30559271 - 30559434
Alignment:
Q  31 taagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca-------- 122  Q
    |||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||  |||  ||||| |||||| ||| ||||            
T  30559271 taagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatctt 30559370  T
Q  123 ---gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 183  Q
       ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559371 tgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  122 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 174  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 172  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 171  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  124 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 169  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  123 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 183  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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