View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8260A_low_41 (Length: 425)

Name: NF8260A_low_41
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8260A_low_41
NF8260A_low_41
[»] chr5 (13 HSPs)
chr5 (7-425)||(6951299-6951715)
chr5 (332-415)||(14299328-14299411)
chr5 (330-424)||(9818730-9818825)
chr5 (328-423)||(18851078-18851173)
chr5 (326-425)||(42858100-42858199)
chr5 (332-401)||(38845441-38845510)
chr5 (326-425)||(31906251-31906350)
chr5 (332-391)||(18637282-18637341)
chr5 (333-420)||(22226235-22226322)
chr5 (332-374)||(32980541-32980583)
chr5 (332-424)||(11648080-11648170)
chr5 (355-407)||(370745-370797)
chr5 (332-396)||(39097244-39097308)
[»] chr8 (15 HSPs)
chr8 (334-424)||(35494990-35495080)
chr8 (334-424)||(32927892-32927982)
chr8 (332-420)||(13384653-13384741)
chr8 (332-407)||(4662915-4662990)
chr8 (332-424)||(36200124-36200219)
chr8 (326-407)||(38868490-38868571)
chr8 (324-420)||(26100145-26100241)
chr8 (332-424)||(32994237-32994329)
chr8 (332-420)||(37684403-37684491)
chr8 (332-407)||(44141062-44141137)
chr8 (329-380)||(6027088-6027139)
chr8 (329-424)||(38335856-38335951)
chr8 (332-424)||(15677810-15677903)
chr8 (343-424)||(32736471-32736552)
chr8 (332-380)||(7244640-7244688)
[»] chr4 (26 HSPs)
chr4 (331-424)||(8604617-8604710)
chr4 (332-424)||(32818365-32818457)
chr4 (336-419)||(52965854-52965937)
chr4 (332-394)||(50061653-50061715)
chr4 (332-424)||(21691207-21691299)
chr4 (332-407)||(31804638-31804714)
chr4 (332-410)||(30357510-30357588)
chr4 (330-424)||(35065059-35065153)
chr4 (329-374)||(12927018-12927063)
chr4 (323-419)||(33456363-33456457)
chr4 (332-393)||(55186988-55187049)
chr4 (332-380)||(9134608-9134656)
chr4 (332-400)||(30357645-30357713)
chr4 (324-380)||(30889777-30889833)
chr4 (332-424)||(14596687-14596781)
chr4 (330-389)||(25927304-25927363)
chr4 (330-380)||(9064227-9064277)
chr4 (327-407)||(15846812-15846889)
chr4 (330-380)||(39733677-39733726)
chr4 (354-404)||(45011894-45011944)
chr4 (332-380)||(1616389-1616436)
chr4 (330-374)||(26181370-26181414)
chr4 (335-407)||(26617469-26617541)
chr4 (326-422)||(33347167-33347263)
chr4 (332-420)||(43868134-43868222)
chr4 (332-380)||(53713600-53713648)
[»] chr2 (14 HSPs)
chr2 (330-390)||(42740973-42741033)
chr2 (337-423)||(5533027-5533113)
chr2 (326-424)||(33019151-33019249)
chr2 (332-419)||(26032035-26032122)
chr2 (334-424)||(42982544-42982634)
chr2 (332-392)||(30503207-30503267)
chr2 (332-380)||(43501123-43501171)
chr2 (332-379)||(10644601-10644648)
chr2 (326-373)||(31453375-31453422)
chr2 (330-420)||(3352072-3352162)
chr2 (335-396)||(2002718-2002779)
chr2 (327-380)||(12037054-12037107)
chr2 (327-379)||(6327109-6327161)
chr2 (332-424)||(11504057-11504148)
[»] chr7 (9 HSPs)
chr7 (332-423)||(41386811-41386902)
chr7 (332-424)||(40491576-40491668)
chr7 (332-417)||(35772256-35772341)
chr7 (332-379)||(30182336-30182383)
chr7 (332-373)||(17111855-17111896)
chr7 (332-380)||(27571860-27571908)
chr7 (353-424)||(42816463-42816534)
chr7 (332-366)||(26984533-26984567)
chr7 (332-424)||(38123661-38123753)
[»] chr1 (24 HSPs)
chr1 (329-424)||(3016157-3016252)
chr1 (336-424)||(11049252-11049340)
chr1 (341-420)||(7524120-7524199)
chr1 (331-396)||(3134755-3134820)
chr1 (332-417)||(7790644-7790729)
chr1 (327-401)||(3416073-3416147)
chr1 (331-396)||(28083911-28083976)
chr1 (327-424)||(47321902-47321998)
chr1 (332-377)||(50571282-50571327)
chr1 (338-391)||(51500862-51500915)
chr1 (332-424)||(1514341-1514433)
chr1 (345-400)||(31362224-31362279)
chr1 (332-418)||(28287337-28287423)
chr1 (335-424)||(30557505-30557592)
chr1 (338-424)||(32370026-32370112)
chr1 (324-389)||(27849129-27849194)
chr1 (335-424)||(30850394-30850483)
chr1 (326-374)||(6021796-6021844)
chr1 (326-390)||(10324967-10325031)
chr1 (356-424)||(28267904-28267972)
chr1 (332-384)||(30996040-30996092)
chr1 (356-424)||(34915088-34915156)
chr1 (337-380)||(36780155-36780199)
chr1 (332-380)||(48549051-48549099)
[»] chr6 (15 HSPs)
chr6 (332-424)||(3482044-3482136)
chr6 (332-380)||(765425-765473)
chr6 (332-380)||(4910906-4910954)
chr6 (332-379)||(6895990-6896037)
chr6 (332-423)||(5724626-5724717)
chr6 (332-391)||(30927041-30927100)
chr6 (330-424)||(434232-434326)
chr6 (332-381)||(7952747-7952796)
chr6 (332-380)||(16540105-16540153)
chr6 (332-407)||(6654102-6654177)
chr6 (357-424)||(17225875-17225942)
chr6 (332-407)||(25195848-25195923)
chr6 (330-424)||(852528-852622)
chr6 (332-364)||(3809661-3809693)
chr6 (354-410)||(19601454-19601510)
[»] chr3 (11 HSPs)
chr3 (355-424)||(31708234-31708303)
chr3 (324-376)||(1441424-1441476)
chr3 (332-420)||(40147849-40147937)
chr3 (336-396)||(47356268-47356328)
chr3 (332-420)||(52364049-52364137)
chr3 (324-371)||(21356960-21357007)
chr3 (338-396)||(32523363-32523422)
chr3 (330-380)||(35058063-35058113)
chr3 (355-408)||(31492788-31492840)
chr3 (332-417)||(40736540-40736624)
chr3 (332-380)||(25359613-25359661)
[»] scaffold0005 (1 HSPs)
scaffold0005 (332-424)||(220597-220691)
[»] scaffold0168 (1 HSPs)
scaffold0168 (332-380)||(31824-31872)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 6951715 - 6951299
Alignment:
Q  7 ttattctacttggtgttgatgatccaaagatatgattcggttttatagagcatgtgttccgttacggctttagggtttctgcaatatttggtgatttgaa 106  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951715 ttatgctacttggtgttggtgatccaaagatatgattcggttttatagagcatgtgttccgttacggctttagggtttctgcaatatttggtgatttgaa 6951616  T
Q  107 tgggccttaacccgctaaaattgggcttttattttccaattaggagtaagaagaaaatgtttcaggcagttgttactcctatctcagaatataattttca 206  Q
    ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||| || | |||||||    
T  6951615 tgggccttaacccgctaaaattgggtttttattttccaatt-ggtgtaagaagaaaatctttcaggcagttgttactcctatctcagtatttcattttca 6951517  T
Q  207 cacccacggcacctttttatatggttagtgtaagtttggttctccacttctagataagccacggaggtgtagaatattgattctgacatatttagttac- 305  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||     
T  6951516 cacccccggcacctttttatatggttagtgtaagtttggttctccacttctagataagccacggaggtgtaga--attgattctgacatatttagttact 6951419  T
Q  306 ttcgagtagaatcagttcgtctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattc 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  6951418 ttcgagtagaatcagttcgtctctataattgattctacttgaagttaggatttgtagcttttgattctataattgatttgtacacataaatttataattc 6951319  T
Q  406 aattaacttttacatgaatt 425  Q
    |||| |||||||||||||||    
T  6951318 aattcacttttacatgaatt 6951299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 14299328 - 14299411
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttt 415  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||  |||||||||| |||| ||| ||| |||||    
T  14299328 aattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaatttatagttcgattcacttt 14299411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 9818730 - 9818825
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattg-gtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||  ||| || ||| |||| |||| ||||| | ||||||| ||||||    
T  9818730 ataattgattctacttgaagctatgatttgtagcttttgattctagaattgattttttaaacacaaatttatagttcaactcacttttatatgaat 9818825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 328 - 423
Target Start/End: Complemental strand, 18851173 - 18851078
Alignment:
Q  328 ctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaa 423  Q
    |||||||||||||||||||||| || |||||||||||||||||| |||||||| |||  ||||| | || |||| || || | |||||||||||||    
T  18851173 ctataattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcacttttacatgaa 18851078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 42858100 - 42858199
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaatt 425  Q
    ||||| |||||||| |||||||||||| |||||| ||||||| |||||| ||||| |||  ||||| |||| |||| ||||| | |||||||||||||||    
T  42858100 ctctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaatt 42858199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 38845441 - 38845510
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtata 401  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| |||  ||||| |||| ||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatata 38845510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 31906251 - 31906350
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaatt 425  Q
    |||||||||||||| ||||||||| || |||||||| ||||||||| || ||||| | | | || |||||| |||| ||||| | |||||||||||||||    
T  31906251 ctctataattgattttacttgaagctatgatttgtaacttttgattatataattgatattttcatataaatttatagttcaactcacttttacatgaatt 31906350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 18637282 - 18637341
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacaca 391  Q
    ||||||||| |||||||| ||||||  |||||||||||||||||||||| ||| ||||||    
T  18637282 aattgattccacttgaagctaagataagtagcttttgattctagaattgatttttacaca 18637341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 420
Target Start/End: Complemental strand, 22226322 - 22226235
Alignment:
Q  333 attgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||||||||||||||| ||  ||||||||||||||||| |||||||   || |||||| |||| || | ||| | ||||||||||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaattaacttttacacacaaatttagagttcgactaacttttacat 22226235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 374
Target Start/End: Original strand, 32980541 - 32980583
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattcta 374  Q
    |||||||| |||||||||||||||||| || ||||||||||||    
T  32980541 aattgattttacttgaagttaagatttatatcttttgattcta 32980583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 11648080 - 11648170
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| |||||||||||  |||||||| || ||||| |||  |||||  ||  |||||||||| | | ||||||||||||    
T  11648080 aattgattctacttgaagctaagatttgtacattttgattataaaattgattttcacacacgaa--tataattcaactcaattttacatgaat 11648170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 370797 - 370745
Alignment:
Q  355 atttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    ||||||||||||||||| || ||||| |||||||||| |||| |||| |||||    
T  370797 atttgtagcttttgattttaaaattgatttgtacacacaaatttatacttcaa 370745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 396
Target Start/End: Original strand, 39097244 - 39097308
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    |||||||||||||||||| ||| ||||||| ||||| ||| || ||||| |||  ||||||||||    
T  39097244 aattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacacataaat 39097308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 35494990 - 35495080
Alignment:
Q  334 ttgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||| ||| |||||| |||| |||| ||||| | ||||||||||||||    
T  35494990 ttgattctacatgaagctaggatttgtagcttttgattctagaattgttttttacacacaaatctatagttcaacttacttttacatgaat 35495080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 32927892 - 32927982
Alignment:
Q  334 ttgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||| || |||||||||||||||||| |||||||  ||| |||||| |||| |||| ||||| | ||||||||||||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaat 32927982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 13384741 - 13384653
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||||||||| |||||| ||| |||||||||||||||||||||||||| |||  ||||| |||| |||| ||||| | ||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaatttatagttcaactcacttttacat 13384653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 4662990 - 4662915
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    |||| ||||||||||||| || ||||||||||||||| ||||||||||| ||| |||||| ||||||||| |||||    
T  4662990 aatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaatgtatagttcaa 4662915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 36200219 - 36200124
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacat---aaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||| ||||||||||| ||||||| | ||||||||||||||||| |||  ||||||    ||| |||||||||||| ||||||||||||||    
T  36200219 aattgattcaacttgaagttatgatttgtcgattttgattctagaattgattttcacacatttataatttataattcaattcacttttacatgaat 36200124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 407
Target Start/End: Original strand, 38868490 - 38868571
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    ||||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| |||  ||||| |||| |||| |||||    
T  38868490 ctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaatttatagttcaa 38868571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 420
Target Start/End: Complemental strand, 26100241 - 26100145
Alignment:
Q  324 gtctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||||| ||||| ||||| |||||| || ||||||||||||||||||||| ||||| ||| |||||| |||| |||  ||||| | ||||||||||    
T  26100241 gtctctagaattggttctatttgaagctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcacttttacat 26100145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 32994329 - 32994237
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| || ||||| |||||||||| |||||||||| ||| || ||| |||| |||| | ||| | ||||||||||||||    
T  32994329 aattgattctacttgaagctatgatttctagcttttgagtctagaattgatttttatacacaaatttatagtgcaaatgacttttacatgaat 32994237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 37684403 - 37684491
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| ||||| |||  |  || |||| |||||||||| | ||||||||||    
T  37684403 aattgattctacttgaagttaggatttgtggcttttgattctaaaattgattttaatgcaaaaatttataattcaactcacttttacat 37684491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 44141137 - 44141062
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||  |||||||| | |||| |||||    
T  44141137 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataattttatagttcaa 44141062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 6027139 - 6027088
Alignment:
Q  329 tataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  6027139 tataattgattctacttgtagttaaagtatgtagcttttgattctagaattg 6027088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 424
Target Start/End: Complemental strand, 38335951 - 38335856
Alignment:
Q  329 tataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||| | |||||| |||||||||| |||||||||| |||||||| ||| ||| || |||| |||| |  || | ||||||||||||||    
T  38335951 tataattgattccagttgaagctaagatttgttgcttttgattttagaattgatttttacgcacaaatttatattctaactcacttttacatgaat 38335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 15677903 - 15677810
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg-gtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| || ||||| |||||||||||| ||||||||  ||| |||||| |||| |||| ||||| | | | ||||||||||    
T  15677903 aattgattctacttgaagctaggatttatagcttttgattatagaattgattttttacacacaaatttatagttcaactcattgttacatgaat 15677810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 343 - 424
Target Start/End: Original strand, 32736471 - 32736552
Alignment:
Q  343 cttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||| ||||||||||||| |||| ||| || ||||  ||| |||||| |||| |||| ||||||| ||||||||||||||    
T  32736471 cttgaaattaagatttgtagttttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatgaat 32736552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 7244688 - 7244640
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||  |||||| ||||| |||||||||||||||||    
T  7244688 aattgattctacttgaaactaagatatgtagtttttgattctagaattg 7244640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 424
Target Start/End: Complemental strand, 8604710 - 8604617
Alignment:
Q  331 taattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||  ||||| |||| |||| || |||  ||||||||||||||    
T  8604710 taattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaat 8604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 32818457 - 32818365
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||| |||||| ||  |||||||||||||||||||||||||| ||| | |||| |||| |||| ||||| ||||||||||||||||    
T  32818457 aattgattctatttgaagctagaatttgtagcttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaat 32818365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 52965937 - 52965854
Alignment:
Q  336 gattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttaca 419  Q
    |||||||||||||||||  |||| ||||||||||||||| ||||| ||   |||||||||| |||||||||| | |||||||||    
T  52965937 gattctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataattcaactcacttttaca 52965854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 332 - 394
Target Start/End: Complemental strand, 50061715 - 50061653
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataa 394  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||| ||| |||  ||||||||    
T  50061715 aattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacacataa 50061653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 21691299 - 21691207
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||| |||||||  |||||||||||||||||| || |||||||| |||  ||||| |||| |||| |||||   ||||||||||||||    
T  21691299 aattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaat 21691207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 31804638 - 31804714
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagct-tttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    |||||||| ||||||||||||| |||||||| | ||| ||| || ||||| ||||||||||||||| ||||||||||    
T  31804638 aattgattttacttgaagttaaaatttgtagttattttattttaaaattgctttgtacacataaatttataattcaa 31804714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 410
Target Start/End: Original strand, 30357510 - 30357588
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaatta 410  Q
    |||||||||||||||||| |  |||||||||||||||||| || ||||| ||| |||||| |||| |||| || |||||    
T  30357510 aattgattctacttgaagctgtgatttgtagcttttgattatataattgatttttacacacaaatttatagttaaatta 30357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 35065059 - 35065153
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||| ||||||||| ||  ||||||  |||||||||||||||||| ||| |||||| |||| ||||  || | | ||||||||||||||    
T  35065059 ataattgattttacttgaagctagtatttgtgacttttgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaat 35065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 12927063 - 12927018
Alignment:
Q  329 tataattgattctacttgaagttaagatttgtagcttttgattcta 374  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||    
T  12927063 tataattgattgtacttaaagttaagagttgtagcttttgattcta 12927018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 33456363 - 33456457
Alignment:
Q  323 cgtctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttaca 419  Q
    |||||||| |||| |||||| || ||  || ||||||||||||||||||||| ||||| ||  | ||||||||| |||| ||||||| |||||||||    
T  33456363 cgtctctagaatttattctatttaaaactatgatttgtagcttttgattctataattgatt--ttcacataaatctatagttcaattcacttttaca 33456457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 55187049 - 55186988
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacata 393  Q
    ||||||||||||||||||||| |||||||| ||||| ||| |||||||| |||  |||||||    
T  55187049 aattgattctacttgaagttaggatttgtaacttttaattatagaattgattttcacacata 55186988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 9134608 - 9134656
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    ||||||| |||||||||| ||| ||||||||||||||||| ||||||||    
T  9134608 aattgatcctacttgaagctaaaatttgtagcttttgattttagaattg 9134656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 30357645 - 30357713
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtat 400  Q
    ||||||||||| |||||| || ||| |||||||||||||| || ||||  ||| |||||||||||||||    
T  30357645 aattgattctaattgaagctatgatctgtagcttttgattatataatttatttttacacataaatgtat 30357713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 30889777 - 30889833
Alignment:
Q  324 gtctctataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    ||||||| ||||||||||||||| | ||||||||||||  |||||||| ||||||||    
T  30889777 gtctctagaattgattctacttgcaattaagatttgtaaattttgattgtagaattg 30889833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 14596687 - 14596781
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgt--acacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| || | |||| || ||||||||||||||||| ||| |  | ||| |||| |||| ||||||| ||||||| ||||||    
T  14596687 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagatacaaaaatttatagttcaattcacttttatatgaat 14596781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 25927304 - 25927363
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtaca 389  Q
    ||||||||||||| ||| |||||||||||||||||| |||||  ||||||| ||| ||||    
T  25927304 ataattgattctatttggagttaagatttgtagcttatgatttcagaattgatttttaca 25927363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 9064227 - 9064277
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||||  ||  |||||||| |||||||||||||||||    
T  9064227 ataattgattctacttgaaactagaatttgtagtttttgattctagaattg 9064277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 15846812 - 15846889
Alignment:
Q  327 tctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    |||| ||||||||||||||||   ||| ||||||| ||||||||||| | |||  ||| ||||||||||| ||||||||||    
T  15846812 tctacaattgattctacttga---taaaatttgtatcttttgattctcggattaatttttacacataaatttataattcaa 15846889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 39733726 - 39733677
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| ||||  ||||||||||||||||| ||||||||    
T  39733726 ataattgattctacttga-gttacaatttgtagcttttgattgtagaattg 39733677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 45011894 - 45011944
Alignment:
Q  354 gatttgtagcttttgattctagaattggtttgtacacataaatgtataatt 404  Q
    ||||||||||||||||||||||||||| |||  ||||| |||| |||||||    
T  45011894 gatttgtagcttttgattctagaattgattttcacacacaaatttataatt 45011944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 1616389 - 1616436
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||| ||| ||  ||||||||||||||||||||||||||    
T  1616389 aattgattctactt-aagctacaatttgtagcttttgattctagaattg 1616436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 26181414 - 26181370
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattcta 374  Q
    ||||||| ||||||||| ||||| |||||||||||| ||||||||    
T  26181414 ataattggttctacttggagttaggatttgtagcttatgattcta 26181370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 26617469 - 26617541
Alignment:
Q  335 tgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    ||||||||||||||| ||  || |||||||||||||| || ||||| ||| || | |||||| ||||||||||    
T  26617469 tgattctacttgaagctagaatctgtagcttttgattataaaattgatttttatagataaatttataattcaa 26617541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 422
Target Start/End: Complemental strand, 33347263 - 33347167
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatga 422  Q
    ||||| |||| ||||||||||||| || ||||||||  |||| |||| | ||||  ||| | |||| |||| |||| ||||||| ||||||||||||    
T  33347263 ctctagaattaattctacttgaaggtaggatttgtaattttttattcgataattaatttttgcacacaaatatatagttcaattcacttttacatga 33347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 43868134 - 43868222
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||||||||| ||||| |||||||||||||||||| | || | | ||  ||| |||| |||||| ||||||| || | ||||||||||    
T  43868134 aattgattctatttgaaattaagatttgtagcttttaactcaaaagttaatttttacatataaatttataatttaagtcacttttacat 43868222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 53713648 - 53713600
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||| ||| ||||||||| || ||||||||||||||||||||| |||||    
T  53713648 aattaattttacttgaagctacgatttgtagcttttgattctataattg 53713600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 42740973 - 42741033
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacac 390  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  42740973 ataattgattctacttgaagctaagatttgtagcttttgattctagaattgatttttacac 42741033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 337 - 423
Target Start/End: Complemental strand, 5533113 - 5533027
Alignment:
Q  337 attctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaa 423  Q
    ||||||||||||| ||  |||||||||||||||||||  ||||| |||  |||||||||| |||||||||| | || ||||||||||    
T  5533113 attctacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataattcaactcacatttacatgaa 5533027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 33019249 - 33019151
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||| |||||||| || |||||| ||  |||||||||||||| || |||||||| |||  |||||||||| |||| ||||| | ||||||||||||||    
T  33019249 ctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaat 33019151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 419
Target Start/End: Complemental strand, 26032122 - 26032035
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttaca 419  Q
    |||||||| ||||||||||||  ||||||| | |||||||||  |||||  |||||||||||||| |||| ||||| | |||||||||    
T  26032122 aattgattatacttgaagttagaatttgtatcatttgattcttaaattgacttgtacacataaatttatacttcaactcacttttaca 26032035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 42982544 - 42982634
Alignment:
Q  334 ttgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||| ||  | |||||||||||||||| ||||||| ||| |||||| |||| |||  | ||| | ||||||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgatttttacacacaaatttattttacaactcacttttacatgaat 42982634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 392
Target Start/End: Original strand, 30503207 - 30503267
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacat 392  Q
    ||||||||||||||||||  | |||| |||||||||||||| ||||||| ||| |||||||    
T  30503207 aattgattctacttgaagccaggattcgtagcttttgattcaagaattgatttttacacat 30503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 43501123 - 43501171
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||  || |||||||||||||||||| ||||||||    
T  43501123 aattgattctacttgaaactaggatttgtagcttttgattttagaattg 43501171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 10644601 - 10644648
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaatt 379  Q
    |||| |||||||||||||||||||||||||| |||| ||| |||||||    
T  10644601 aatttattctacttgaagttaagatttgtagtttttcattatagaatt 10644648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 373
Target Start/End: Original strand, 31453375 - 31453422
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattct 373  Q
    |||||||||||||||||||||||| ||| ||||||  |||||||||||    
T  31453375 ctctataattgattctacttgaagctaaaatttgttccttttgattct 31453422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 420
Target Start/End: Original strand, 3352072 - 3352162
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    |||||||||| |||||||||||  || ||| |||||||||||||| ||||| |||  ||||| |||| |||  ||||| | ||||||||||    
T  3352072 ataattgattttacttgaagttgggaattgcagcttttgattctataattgattttcacacacaaatttatgtttcaacttacttttacat 3352162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Complemental strand, 2002779 - 2002718
Alignment:
Q  335 tgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    ||||||||||||||| || ||||||||| |||| |||||| ||||| ||| |||||| ||||    
T  2002779 tgattctacttgaagctaggatttgtagtttttcattctaaaattgatttttacacacaaat 2002718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 12037054 - 12037107
Alignment:
Q  327 tctataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||| ||||||||||| |||||  ||| |||||||||||||||||||| |||||    
T  12037054 tctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattg 12037107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 6327161 - 6327109
Alignment:
Q  327 tctataattgattctacttgaagttaagatttgtagcttttgattctagaatt 379  Q
    |||| |||||||||||||||||  ||| |||||||| ||||||||||| ||||    
T  6327161 tctagaattgattctacttgaaactaaaatttgtagtttttgattctaaaatt 6327109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 11504148 - 11504057
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||||   |||||| ||||||||| |||||||| ||||||| ||||  ||||| |||  |||| ||||| | ||||||||||||||    
T  11504148 aattgattctaccgaaagttaggatttgtagtttttgattatagaatt-gttttcacacacaaagttatagttcaactcacttttacatgaat 11504057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 41386902 - 41386811
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaa 423  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||| | | |||||| |||| |||||||||| | |||||| ||||||    
T  41386902 aattgattctacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataattcaactcacttttgcatgaa 41386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 40491576 - 40491668
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||  || |||||| |||| || | || || | ||||||||||||||    
T  40491576 aattgactctacttgaagttaagttttgtagcttttgattctagaattgacttttacacacaaatttaaagtttaactcacttttacatgaat 40491668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 332 - 417
Target Start/End: Original strand, 35772256 - 35772341
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaactttta 417  Q
    |||| ||||||||| || ||||||||||||| |||||||| |||||||| |||  ||| |||||| |||||||||||| |||||||    
T  35772256 aatttattctacttaaaattaagatttgtagtttttgattttagaattgattttcacaaataaatttataattcaatttactttta 35772341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 30182383 - 30182336
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaatt 379  Q
    |||||||||||||||||| ||| | |||||||||||||||||||||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaatt 30182336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 373
Target Start/End: Original strand, 17111855 - 17111896
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattct 373  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  17111855 aattgattctacttgaagctatgatttgtagcttttgattct 17111896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 27571860 - 27571908
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||||||    
T  27571860 aattgattctacttgaagttagaaattggagcttttgattctagaattg 27571908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 42816534 - 42816463
Alignment:
Q  353 agatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||| || ||||| |||||||||||| |||  ||||| |||| |||||||||||| |||| |||||||||    
T  42816534 agatttataacttttaattctagaattgattttcacacacaaatttataattcaattcacttctacatgaat 42816463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 26984567 - 26984533
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttt 366  Q
    |||||||||||||||||| ||||||||||||||||    
T  26984567 aattgattctacttgaagctaagatttgtagcttt 26984533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 38123753 - 38123661
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| ||  | ||||||||| | |||||||||||| ||| |||||  |||| |||   |||| | ||||||||||||||    
T  38123753 aattgattctacttgaagctagaaattgtagcttctaattctagaattgatttttacactcaaatttattggtcaactcacttttacatgaat 38123661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 329 - 424
Target Start/End: Original strand, 3016157 - 3016252
Alignment:
Q  329 tataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||| | | ||||||||||| ||   ||||| | ||||||||||||||    
T  3016157 tataattgattctacttgaacttagaatttgtagcttttgattctagaattgatgtttacacataaatttacggttcaactcacttttacatgaat 3016252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 336 - 424
Target Start/End: Original strand, 11049252 - 11049340
Alignment:
Q  336 gattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||| || ||||||||||||||||||||| ||||| ||| |||||| |||| |||| ||||| | |||||||| |||||    
T  11049252 gattctacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaat 11049340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 7524120 - 7524199
Alignment:
Q  341 tacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    |||||||||||| |||||||||||||||||| |||||||| ||| |||||| |||| |||| ||||| | ||||||||||    
T  7524120 tacttgaagttaggatttgtagcttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacat 7524199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 3134820 - 3134755
Alignment:
Q  331 taattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    ||||||||||||||| ||| ||||||||||| ||||||||  || ||||||||| |||||||||||    
T  3134820 taattgattctactttaagataagatttgtaacttttgatcataaaattggtttttacacataaat 3134755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 7790729 - 7790644
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaactttta 417  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||| ||||| ||| |||||| |||| |||  ||||| | |||||||    
T  7790729 aattgattctacttgaagttatgatttgtagatttagattctataattgatttttacacacaaatttattgttcaactcactttta 7790644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 401
Target Start/End: Original strand, 3416073 - 3416147
Alignment:
Q  327 tctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtata 401  Q
    |||| |||||||| ||||| |||||||||||||||| |||| ||| |||||||| ||| |||||| |||| ||||    
T  3416073 tctaaaattgattatacttaaagttaagatttgtagttttttattttagaattgatttttacacacaaatttata 3416147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 396
Target Start/End: Complemental strand, 28083976 - 28083911
Alignment:
Q  331 taattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    ||||||||||||||||||| ||  |||||||||||||||||||| ||||  ||| |||||| ||||    
T  28083976 taattgattctacttgaagctagaatttgtagcttttgattctataattaatttttacacacaaat 28083911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 424
Target Start/End: Complemental strand, 47321998 - 47321902
Alignment:
Q  327 tctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||||| ||||||||| ||  ||||| || |||| |||||||||||| |||  | ||| |||| |||| ||||||| ||||||||||||||    
T  47321998 tctataattgattatacttgaagctagaatttgcag-ttttaattctagaattgattttcatacacaaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 50571282 - 50571327
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaa 377  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||    
T  50571282 aattgattctacttgaagttaggatttgtagttttttattctagaa 50571327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 51500915 - 51500862
Alignment:
Q  338 ttctacttgaagttaagatttgtagcttttgattctagaattggtttgtacaca 391  Q
    |||||||||||  || ||||||||||||||||||||||||||| ||| ||||||    
T  51500915 ttctacttgaacctaggatttgtagcttttgattctagaattgatttttacaca 51500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 1514341 - 1514433
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||| ||||||||||||| || |||||||||||||| ||| || ||||| ||| |||||| |||| |||  ||||| | | ||||||||||||    
T  1514341 aatttattctacttgaagctaggatttgtagctttttattatataattgatttttacacacaaatttattgttcaactcatttttacatgaat 1514433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 31362279 - 31362224
Alignment:
Q  345 tgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtat 400  Q
    ||||||||  |||||||||||||||||||||||||| ||| || | ||||||||||    
T  31362279 tgaagttagaatttgtagcttttgattctagaattgatttttataaataaatgtat 31362224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 418
Target Start/End: Complemental strand, 28287423 - 28287337
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttac 418  Q
    ||||| ||||||||||||  | |||||||||||||||||| |||||||| |||  ||||  |||| |||  ||||| ||||||||||    
T  28287423 aattggttctacttgaagcaaggatttgtagcttttgattttagaattgattttaacactcaaatttattgttcaactaacttttac 28287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 424
Target Start/End: Original strand, 30557505 - 30557592
Alignment:
Q  335 tgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||| |||||| || ||||||||| ||||||||||||||||| ||  | |||| |||| |||| ||||| | ||||||| ||||||    
T  30557505 tgattctagttgaagctaggatttgtagtttttgattctagaattgatt--ttcacacaaatttatagttcaactcacttttatatgaat 30557592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 32370112 - 32370026
Alignment:
Q  338 ttctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||  |||||||  |||| |||||||||||  ||| |||||| |||| ||||||| || |  |||||||||||||    
T  32370112 ttctacttgaagttagaatttgtaattttttattctagaattattttttacacacaaatttataattgaacttgcttttacatgaat 32370026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 27849129 - 27849194
Alignment:
Q  324 gtctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtaca 389  Q
    ||||||| ||||||  |||||||||| || ||| ||||||||||||| ||||||||| ||| ||||    
T  27849129 gtctctaaaattgaaactacttgaagctacgatgtgtagcttttgatactagaattgatttttaca 27849194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 424
Target Start/End: Complemental strand, 30850483 - 30850394
Alignment:
Q  335 tgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||||||  || ||||||||| |||| ||| |||||||| |||  ||| | |||| |||| ||||| | ||||||||||||||    
T  30850483 tgattctacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttatagttcaactcacttttacatgaat 30850394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 6021796 - 6021844
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattcta 374  Q
    ||||| ||| |||||||||||||| || ||| |||||||||||||||||    
T  6021796 ctctagaatcgattctacttgaagctaggatatgtagcttttgattcta 6021844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 390
Target Start/End: Complemental strand, 10325031 - 10324967
Alignment:
Q  326 ctctataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacac 390  Q
    ||||| |||||| ||||||||||| ||  | |||||||||||||||||| ||||| ||| |||||    
T  10325031 ctctagaattgagtctacttgaagatagaaattgtagcttttgattctataattgatttttacac 10324967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 424
Target Start/End: Complemental strand, 28267972 - 28267904
Alignment:
Q  356 tttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||| || |||||||||||||  |||  || ||||||| |||||||||| | ||||||||||||||    
T  28267972 tttgtagtttatgattctagaattaattttaacgcataaatttataattcaagttacttttacatgaat 28267904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 384
Target Start/End: Original strand, 30996040 - 30996092
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggttt 384  Q
    ||||||||||||||||||||| |||| |||| |||| ||| ||||||| ||||    
T  30996040 aattgattctacttgaagttatgattagtagttttttattatagaattagttt 30996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 34915088 - 34915156
Alignment:
Q  356 tttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||||||||||||||||| ||   |||||  | | |||||||||| | ||||||||||||||    
T  34915088 tttgtagcttttgattctagaattgattctaacacaccattttataattcaactcacttttacatgaat 34915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 380
Target Start/End: Complemental strand, 36780199 - 36780155
Alignment:
Q  337 attctacttgaagttaagattt-gtagcttttgattctagaattg 380  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||    
T  36780199 attctacttgaagttaggattttgtagcttttgattatagaattg 36780155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 48549099 - 48549051
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| ||  | ||||||||| ||||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattg 48549051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 424
Target Start/End: Original strand, 3482044 - 3482136
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||  ||||| || | |||| ||||| | ||||||||||||||    
T  3482044 aattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaat 3482136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 765473 - 765425
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  765473 aattgattctacttgaagctatgatttgtagcttttgattctagaattg 765425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 4910906 - 4910954
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattg 4910954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 379
Target Start/End: Complemental strand, 6896037 - 6895990
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaatt 379  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  6896037 aattgattctacctgaagttaggatttgtagcttttgattctagaatt 6895990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 423
Target Start/End: Complemental strand, 5724717 - 5724626
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaa 423  Q
    |||||||||||||||||| || |||||||| ||||| |||||| ||||| ||| |||||| |||| ||| ||| || | ||||||| |||||    
T  5724717 aattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatatcatttaactcacttttatatgaa 5724626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 30927041 - 30927100
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacaca 391  Q
    |||||||| ||||||||| ||||||| ||||||||||||| |||||||| ||| ||||||    
T  30927041 aattgattatacttgaagctaagattcgtagcttttgattatagaattgatttttacaca 30927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 434326 - 434232
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||| || |||||||||| |||  |||||||||||| |||||||| ||| || |||||||| || | ||||| | ||||||||| ||||    
T  434326 ataattgattatatttgaagttaaaattaatagcttttgattttagaattgatttttatacataaatttaaatttcaactcacttttacacgaat 434232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 7952796 - 7952747
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattgg 381  Q
    |||| |||||||||||||  | ||||||||||||||||||||||||||||    
T  7952796 aatttattctacttgaagcgaggatttgtagcttttgattctagaattgg 7952747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 16540105 - 16540153
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||| || |||||||||||||||||| | ||||||    
T  16540105 aattgattctacttgaagctaggatttgtagcttttgattattgaattg 16540153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 6654177 - 6654102
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    |||| ||||||||||||| || |||||||||||||| |||||||| ||| |||  ||||| |||| |||| |||||    
T  6654177 aattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttcaa 6654102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 17225875 - 17225942
Alignment:
Q  357 ttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||||||||| ||| |||| | |||| |||| ||||| | | ||||||||||||    
T  17225875 ttgtagcttttgattctagaattgatttttacatacaaatttatagttcaactcagttttacatgaat 17225942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Original strand, 25195848 - 25195923
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaa 407  Q
    ||||||||||| || ||  || ||||| |||||||||||||||||||||  ||||||||| |||| |||| |||||    
T  25195848 aattgattctaattaaaactaggatttatagcttttgattctagaattgaattgtacacacaaatttatagttcaa 25195923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 852528 - 852622
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    ||||||||||| |||||||| ||  | |||||| || |||||||||||||| ||| |||||  ||||||||  || || | ||||||||||||||    
T  852528 ataattgattcaacttgaagctagaaattgtaggttctgattctagaattgatttttacacccaaatgtattgtttaactcacttttacatgaat 852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 3809661 - 3809693
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagct 364  Q
    |||| ||||||||||||||||||||||||||||    
T  3809661 aattaattctacttgaagttaagatttgtagct 3809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 410
Target Start/End: Complemental strand, 19601510 - 19601454
Alignment:
Q  354 gatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaatta 410  Q
    ||||||||||||||||||||| || || ||| |||| |||||| |||| ||||||||    
T  19601510 gatttgtagcttttgattctataactgatttttacaaataaatttatagttcaatta 19601454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 424
Target Start/End: Complemental strand, 31708303 - 31708234
Alignment:
Q  355 atttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||||||||||| ||   ||||| |||| |||||||||| | ||||||||||||||    
T  31708303 atttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaat 31708234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 1441476 - 1441424
Alignment:
Q  324 gtctctataattgattctacttgaagttaagatttgtagcttttgattctaga 376  Q
    ||||||||||| || ||||||||||  || |||||||||||||||||||||||    
T  1441476 gtctctataatcgactctacttgaaactaggatttgtagcttttgattctaga 1441424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 420
Target Start/End: Complemental strand, 40147937 - 40147849
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    |||||||||||||| ||| ||  ||||| |||||||||||||||||||| |||  |||| | ||| ||| |||||| | ||||||||||    
T  40147937 aattgattctacttcaagctagaatttggagcttttgattctagaattgatttcaacacttgaatttatcattcaactcacttttacat 40147849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 396
Target Start/End: Complemental strand, 47356328 - 47356268
Alignment:
Q  336 gattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    ||||| ||||||||||||||||| |||  ||||||| |||||||| ||| |||||||||||    
T  47356328 gattccacttgaagttaagatttatagtctttgattatagaattgatttttacacataaat 47356268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 52364049 - 52364137
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaacttttacat 420  Q
    ||||| |||||||||||| || ||||| ||||||||||||||| ||||| |||  | |||||||| || | ||||| | ||||||||||    
T  52364049 aattgtttctacttgaagctatgatttatagcttttgattctataattgattttcaaacataaatttacagttcaactcacttttacat 52364137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 371
Target Start/End: Original strand, 21356960 - 21357007
Alignment:
Q  324 gtctctataattgattctacttgaagttaagatttgtagcttttgatt 371  Q
    |||||||||||||||| |||||||||||| ||||| || |||||||||    
T  21356960 gtctctataattgattatacttgaagttaggatttatatcttttgatt 21357007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 32523422 - 32523363
Alignment:
Q  338 ttctacttg-aagttaagatttgtagcttttgattctagaattggtttgtacacataaat 396  Q
    ||||||||| |||||| ||||||||||||||||||||| ||||| ||| |||||| ||||    
T  32523422 ttctacttggaagttaggatttgtagcttttgattctaaaattgatttttacacacaaat 32523363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 35058063 - 35058113
Alignment:
Q  330 ataattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||| ||||| || |||||||||||||| ||| ||||||||    
T  35058063 ataattgattctacatgaagctaggatttgtagcttttaattatagaattg 35058113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 408
Target Start/End: Original strand, 31492788 - 31492840
Alignment:
Q  355 atttgtagcttttgattctagaattggtttgtacacataaatgtataattcaat 408  Q
    |||||||||||||||||||||||||| |||  ||||| |||| |||||||||||    
T  31492788 atttgtagcttttgattctagaattgattt-aacacacaaatttataattcaat 31492840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 40736624 - 40736540
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgtacacataaatgtataattcaattaactttta 417  Q
    |||||||||||||||||  ||  |||||| |||||||||||||| |||  |||  ||||| |||| |||||||||||||| |||||    
T  40736624 aattgattctacttgaaactataatttgtcgcttttgattctag-attaattttcacacacaaatttataattcaattaattttta 40736540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 25359661 - 25359613
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||||||||||||||||  |||||||| |||| |||||| |||||    
T  25359661 aattgattctacttgaagttagaatttgtagttttttattctataattg 25359613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 424
Target Start/End: Complemental strand, 220691 - 220597
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattggtttgt--acacataaatgtataattcaattaacttttacatgaat 424  Q
    |||||||||||||||||| || | |||| || ||||||||||||||||| ||| |  | ||| |||| |||| ||||||| ||||||| ||||||    
T  220691 aattgattctacttgaagctatgttttgcagtttttgattctagaattgatttttagatacaaaaatttatagttcaattcacttttatatgaat 220597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 31824 - 31872
Alignment:
Q  332 aattgattctacttgaagttaagatttgtagcttttgattctagaattg 380  Q
    |||||||| ||||||||| || |||||||||||||||||| | ||||||    
T  31824 aattgattatacttgaagctaggatttgtagcttttgattattgaattg 31872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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