View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_414 (Length: 229)
Name: NF8260A_low_414
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_414 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 5195634 - 5195424
Alignment:
| Q |
3 |
atttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgagg |
102 |
Q |
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| T |
5195634 |
atttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctgagg |
5195535 |
T |
|
| Q |
103 |
tttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataa |
202 |
Q |
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|||||||||||||||||||| || |||||||||||| ||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||| |||| |
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| T |
5195534 |
tttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcatagtcctgtcataa |
5195435 |
T |
|
| Q |
203 |
ttaactatgtc |
213 |
Q |
| |
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||||||||||| |
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| T |
5195434 |
ttaactatgtc |
5195424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 4842630 - 4842827
Alignment:
| Q |
16 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
115 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||| | |
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| T |
4842630 |
gataagaatgtcaaggatgtgagattggtagtgaaggatggaaaatttccaccgaacagattatggctaaggtcaagaattctgaggtttgttaagttac |
4842729 |
T |
|
| Q |
116 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
213 |
Q |
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| T |
4842730 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
4842827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 5159992 - 5159789
Alignment:
| Q |
3 |
atttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgagg |
102 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| || |||| |||||||| |||||| ||||||||||||| | ||| ||||||||||||||| |
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| T |
5159992 |
atttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaactttccactgaacagattattactaagttcaagaactctgagg |
5159893 |
T |
|
| Q |
103 |
tttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataa |
202 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||||||||| |||||||| ||||||||||||| |||| |
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| T |
5159892 |
tttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataa |
5159793 |
T |
|
| Q |
203 |
ttaa |
206 |
Q |
| |
|
|||| |
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|
| T |
5159792 |
ttaa |
5159789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 5182240 - 5182037
Alignment:
| Q |
3 |
atttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgagg |
102 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| || |||| ||||||||||||||| ||||||||||||| | ||| ||||||||||| ||| |
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| T |
5182240 |
atttccatagaaggataagtatgccagtgatgtgagattgctaatgaaagatggaaaatttccactgaacagattattactaagttcaagaactctaagg |
5182141 |
T |
|
| Q |
103 |
tttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataa |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||| |||||| |||| |||||||||| |||||||| ||||||||||||| |||| |
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|
| T |
5182140 |
tttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcctgtcataa |
5182041 |
T |
|
| Q |
203 |
ttaa |
206 |
Q |
| |
|
|||| |
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|
| T |
5182040 |
ttaa |
5182037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 5172895 - 5172698
Alignment:
| Q |
16 |
gataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgaggtttgttaagttgc |
115 |
Q |
| |
|
|||||| ||| || |||||||||||| || |||||||||||||||||||| |||| ||||||| || ||||||||||| |||||||||||||||||| | |
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| T |
5172895 |
gataagaatgtcaaggatgtgagattactaatgaaggatggaaaatttccactgaatagattatggctaaggtcaagaattctgaggtttgttaagttac |
5172796 |
T |
|
| Q |
116 |
ttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgtaataattaactatgtc |
213 |
Q |
| |
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|||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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| T |
5172795 |
ttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcatagtcctgtcataattaactatgtc |
5172698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 5213800 - 5213606
Alignment:
| Q |
3 |
atttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttccagtgaacagattattgccaaggtcaagaactctgagg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||| ||||| || ||| |||||||| | ||| |
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| T |
5213800 |
atttccaaagagggataagtatgccagtgatgtgagattactaatgaaggatggaaaatttccactgaacaaattatagctaagttcaagaacattcagg |
5213701 |
T |
|
| Q |
103 |
tttgttaagttgcttaaacactcaggaagtttagcatcaaacatgttattgctgatgtccagttctaccaaacccttcaaactgcatagtcctgt |
197 |
Q |
| |
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||||||||||||||||||||||| ||||||| || ||||||||||| |||||| || || ||||||||| ||||||| ||||||||||||| |
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| T |
5213700 |
tttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgt |
5213606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 4857091 - 4857151
Alignment:
| Q |
3 |
atttccaaagaaggataagtatgccagggatgtgagattggtagtgaaggatggaaaatttc |
64 |
Q |
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||||||| ||| ||||| |||||| || |||||||||||||||||||||||||||||||||| |
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| T |
4857091 |
atttccatagatggata-gtatgcaagagatgtgagattggtagtgaaggatggaaaatttc |
4857151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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