View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_417 (Length: 229)
Name: NF8260A_low_417
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_417 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
| [»] scaffold1769 (1 HSPs) |
| |
|
| [»] scaffold0060 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 7915435 - 7915664
Alignment:
| Q |
7 |
accttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgag-----------attttgaaatttagcatgttcggcactcta--caatt |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
7915435 |
accttaacaggaacaactaatggagtgagaataaaaacttggaaggtatgagttggtcttgagattttgaaatttagcatgttctgcactctatacaatt |
7915534 |
T |
|
| Q |
94 |
caagacaattgaaattgaaaggatacacttgatagaggttaagaataaatttaaaaagtggactttctacttttcatgttaattttgttttggggcattc |
193 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
7915535 |
caagacaatt------gaaaggatacacttgatagaggttaagaataaatttaaaaagtggactttctacttttcatattaattatgttttggggcattc |
7915628 |
T |
|
| Q |
194 |
tataagttttaagggatttttgaaataacatggttg |
229 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7915629 |
tataagtttaaagggatttttgaaataacatggttg |
7915664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 8364492 - 8364352
Alignment:
| Q |
55 |
tgagattttgaaatttagcatgttcggcactctacaattcaagacaattgaaattgaaaggatacacttgatagaggttaagaataaa--tttaaaaagt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||||||| || ||||| | |
|
|
| T |
8364492 |
tgagattttgaaatttagcatgttcggcactctacaattc--gacagttgaaa------gaatacacttgatagaggttaagaataaactttcaaaaact |
8364401 |
T |
|
| Q |
153 |
ggactttctacttttcatgttaattttgttttggggcattctataagtt |
201 |
Q |
| |
|
||| ||| |||| ||||||| |||||||| ||| ||||||| |||||| |
|
|
| T |
8364400 |
ggaacttcaacttatcatgtttattttgttatggagcattctgtaagtt |
8364352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 148 - 229
Target Start/End: Complemental strand, 8442612 - 8442531
Alignment:
| Q |
148 |
aaagtggactttctacttttcatgttaattttgttttggggcattctataagttttaagggatttttgaaataacatggttg |
229 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
8442612 |
aaagtggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttg |
8442531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 8348481 - 8348336
Alignment:
| Q |
55 |
tgagattttgaaatttagcatgttcggcactctacaattcaagacaattgaaattgaaaggatacacttgatagaggttaagaataaattt---aaaaag |
151 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||| |||| | ||||||| |||||||||| |||||||| ||||||| || |||| | |
|
|
| T |
8348481 |
tgagattttgaagtttagcatgttcggaactctacaattcgagac------agttgaaagaatacacttgaaagaggttacgaataaactttcaaaaatg |
8348388 |
T |
|
| Q |
152 |
tggactttctact--tttcatgttaattttgttttggggcattctataagtt |
201 |
Q |
| |
|
|||| |||| ||| | ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8348387 |
tggaatttcaacttatatcaggttaattttgttttggggcattctataagtt |
8348336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 8442695 - 8442654
Alignment:
| Q |
57 |
agattttgaaatttagcatgttcggcactctacaattcaaga |
98 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
8442695 |
agattttgaaatttagcatgttaggcactctagaattcaaga |
8442654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 8348536 - 8348499
Alignment:
| Q |
11 |
taacaggaacaactaatggagtgagaataaaaacttgg |
48 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
8348536 |
taacaggaacaactaatggagtgaggataataacttgg |
8348499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1769 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1769
Description:
Target: scaffold1769; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 335 - 501
Alignment:
| Q |
55 |
tgagattttgaaatttagcatgttcggcactctacaattcaagacaattgaaattgaaaggatacacttgatagaggttaagaataaatttaa--aaagt |
152 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| | |||||| | ||| |||||||||||| ||| | ||| | ||||| |
|
|
| T |
335 |
tgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaa------gaatagacttgatagaggataa----acttttcaggaaagt |
424 |
T |
|
| Q |
153 |
ggactttctacttttcatgttaattttgttttggggcattctataagttttaagggatttttgaaataacatggttg |
229 |
Q |
| |
|
||| |||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
425 |
ggaatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttg |
501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 69256 - 69422
Alignment:
| Q |
55 |
tgagattttgaaatttagcatgttcggcactctacaattcaagacaattgaaattgaaaggatacacttgatagaggttaagaataaatttaaaaagtgg |
154 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||| | |||||| | ||| |||||||||||| ||| | | | ||||||| |
|
|
| T |
69256 |
tgagattttgaaatttagcatgttaggcactctagaattcaagatagttgaaa------gaatagacttgatagaggataaacttt--tctggaaagtgg |
69347 |
T |
|
| Q |
155 |
actttctacttttcatgttaattttgttttggggcattctataagttttaagggatttttgaaataacatggttg |
229 |
Q |
| |
|
| |||| |||| ||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
69348 |
aatttcaacttatcatgttaattttgttttggggcatcctataagtttaaaggaatttttgaaataacttggttg |
69422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 65316 - 65443
Alignment:
| Q |
55 |
tgagattttgaaatttagcatgttcggcactctacaattcaagacaattgaaattgaaaggatacacttgatagaggttaagaataaa--tttaaaaagt |
152 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| |||||| |||||| | ||| ||||||||||||||||||||||| || ||||| | |
|
|
| T |
65316 |
tgagattttgaaatatagcatgttaggcactctacaatttaagacagttgaaa------gaataaacttgatagaggttaagaataaactttcaaaaact |
65409 |
T |
|
| Q |
153 |
ggactttctacttttcatgttaattttgttttgg |
186 |
Q |
| |
|
||| |||| |||| |||||||||||||||||||| |
|
|
| T |
65410 |
ggaatttcaacttatcatgttaattttgttttgg |
65443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 65266 - 65298
Alignment:
| Q |
15 |
aggaacaactaatggagtgagaataaaaacttg |
47 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
65266 |
aggaacaactaatggagtgagattaaaaacttg |
65298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 24857405 - 24857451
Alignment:
| Q |
8 |
ccttaacaggaacaactaatggagtgagaataaaaacttggaaggta |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
24857405 |
ccttaacaggaacaactaatggagtgagaataaaaacatggcaggta |
24857451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University