View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_42 (Length: 424)
Name: NF8260A_low_42
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 41099957 - 41099544
Alignment:
| Q |
11 |
agaatattattgttttcttggcatgctttcatctcaaatgttgattatgttgctttaaagtaattttgttatggacatttgaaagtcagatattttattt |
110 |
Q |
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| T |
41099957 |
agaatattattgttttcttggcatgctttcatctcaaatgttgattatgttgctttaaagtaattttgttatggacatttgaaagtctgatattttattt |
41099858 |
T |
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| Q |
111 |
ttgaacagtgtacttgaatttctcaagaaccttgtatgccaacatgggcttgcatgtttttaaatcagattatctatcttttttaatttcgttcttgaat |
210 |
Q |
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| T |
41099857 |
ttgaacagtgtacttgaatttctcaagaaccttgtatgccaacatgggcttgcatgtttttaaatcagattatctatcttttttaatttcgttcttgaat |
41099758 |
T |
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| Q |
211 |
gattttgtggttttttcatttagctcccggttgaaaagatagtgcttattgttacaagattttccaaatacgaactcaggcaaactgatcaacctagttt |
310 |
Q |
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| T |
41099757 |
gattttgtggttttttcatttagctcccggttgaaaagatagtgcttattgttacaagattttccaaatacgaactcagggaaactgatcaacctagttt |
41099658 |
T |
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| Q |
311 |
ggaacgacaatgaacacaaatgtgttgtgctctctactttcaattgacgggaattcaattgtgagcttgttaagcttcaatgtgaatggacaacaaatgt |
410 |
Q |
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| T |
41099657 |
ggaacgacaatgaacacaaatgtgttgtgctctctactttcaattgacgggaattcaattgtgagcttgttaagcttcaatgtgaatggacaacaaatgt |
41099558 |
T |
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| Q |
411 |
ggcgtattctctgc |
424 |
Q |
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| T |
41099557 |
gtcgtattctctgc |
41099544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 29713550 - 29713672
Alignment:
| Q |
289 |
ggcaaactgatcaacctagtttggaacgacaatgaacacaaatgtgttgtgctctctactttcaattgacgggaattcaattgtgagcttgt--taagct |
386 |
Q |
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| T |
29713550 |
ggcaaactgatggacctagtt-ggcacgacaatgaacacaaatgtgttgtgttctctccttttgatttactggaattcaa-tgctaacttgttataagct |
29713647 |
T |
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| Q |
387 |
tcaatgtgaatggacaacaaatgtg |
411 |
Q |
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| T |
29713648 |
tcaatgtgaatggacaacaaatgtg |
29713672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 29752951 - 29753099
Alignment:
| Q |
84 |
gacatttgaaagtcagatattttatttttga-acagtgtacttgaatttctcaagaaccttgtatgccaacat---gggcttgcatgtttt-taaatcag |
178 |
Q |
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| T |
29752951 |
gacatttgaaagtttcatattttatttttgacaaagtgtgcttgaatgtctcaagaaacttgtattcaagcatatatggtttgcatgttttattaatcag |
29753050 |
T |
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| Q |
179 |
attatc--tatcttttttaatttcgttcttgaatgattttgtggttttt |
225 |
Q |
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| T |
29753051 |
attatcttttttttttttttttttcttcttgaatgattttgtggttttt |
29753099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 29729677 - 29729631
Alignment:
| Q |
26 |
tcttggcatgctttcatctcaaatgttgattatgttgctttaaagta |
72 |
Q |
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| T |
29729677 |
tcttggcatgatttcttctcaaatgttgatgatgttgctttgaagta |
29729631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 1152061 - 1151948
Alignment:
| Q |
40 |
catctcaaatgttgattatgttgctttaaagtaattttgttatggacatttgaaagtcagatattttatttttgaacagt----gtacttgaatttctca |
135 |
Q |
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| T |
1152061 |
catcacaaatgttgatgttgttgctttaaattaatttggtcggagacatttgaaagtttgatattttatttttgaatagtactgttacttgaatttctaa |
1151962 |
T |
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| Q |
136 |
agaaccttgtatgc |
149 |
Q |
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| T |
1151961 |
agaaccttctatgc |
1151948 |
T |
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