View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_421 (Length: 229)
Name: NF8260A_low_421
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_421 |
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| [»] chr3 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 53513010 - 53513225
Alignment:
| Q |
14 |
acaataaataccaatatatgctctgctctagaagtacctgcatgtgtagtgcccgaaagtttgcactcccgaagatgcagccacttagttgaagcccatt |
113 |
Q |
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| T |
53513010 |
acaataaataccaatatatgctctgctctagaagtacctgcatgtgtagtgcccgaaagtttgcactcccgaagatgcagccacttagttgaagcccatt |
53513109 |
T |
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| Q |
114 |
tatttcctctaattactggactaccgcctgaaagcaaagattaattaaataacttcatcattcatagcttgaaatttccaatgtgaaatgtaatataagt |
213 |
Q |
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| T |
53513110 |
tatttcctctaattactggactaccgcctgaaagcaaagattaattaaataacttcatcattcatagcttgaaatttccaatgtgaaatgtaatataagt |
53513209 |
T |
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| Q |
214 |
ttgaatcacatggcta |
229 |
Q |
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| T |
53513210 |
ttgaatcacatggcta |
53513225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 53509508 - 53509692
Alignment:
| Q |
45 |
aagtacctgcatgtgtagtgcccgaaagtttgcactcccgaagatgcagccacttagttgaagcccatttatttcctctaattactggactaccgcctga |
144 |
Q |
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| T |
53509508 |
aagtacctggaagtgccgtgcccaaaactttgaactccgtaagatgcagccacttagttgaagcccatttatttcctctaattaccggactaccgcctga |
53509607 |
T |
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| Q |
145 |
aagcaaagattaattaaataacttcatcattcatagcttgaaatttccaatgtgaaatgtaatataagtttgaatcacatggcta |
229 |
Q |
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| T |
53509608 |
aagcaaagaaaaattaaataacttcatcattcatatcttcaaatttccaatgtggaatgtaatataggtttgaatcacatggcta |
53509692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 53523741 - 53523885
Alignment:
| Q |
85 |
aagatgcagccacttagttgaagcccatttatttcctctaattactggactaccgcctgaaagcaaagattaattaaataacttcatcattcatagcttg |
184 |
Q |
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| T |
53523741 |
aagatgcagcaacttatttgaagcccatttacttcctctaattactgggctaccacctgaaagcaaagataaattaattaacttcatcattcatagcttc |
53523840 |
T |
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| Q |
185 |
aaatttccaatgtgaaatgtaatataagtttgaatcacatggcta |
229 |
Q |
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| T |
53523841 |
taatttctaaagtagaatgtaatataagtttgaatcacatggcta |
53523885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 53547208 - 53547364
Alignment:
| Q |
40 |
tctagaagtacctgcatgtgtagtgcccgaaagtttgcactcccgaagatgcagccacttagttgaagcccatttatttcctctaattactggactaccg |
139 |
Q |
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| T |
53547208 |
tctagaagtacttgcacaggtaatgccttaaactttgtactcctcaagatgcatccactttgttgaagaccatttatttcctacaattacggggcaaccg |
53547307 |
T |
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| Q |
140 |
cctgaaagcaaagattaattaaataacttcatcattcatagcttgaaatttccaatg |
196 |
Q |
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| T |
53547308 |
cctgaaagcaaagataaattaattaacttcatcaatcatagcttttaatttccaatg |
53547364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 85 - 229
Target Start/End: Complemental strand, 16610051 - 16609908
Alignment:
| Q |
85 |
aagatgcagccacttagttgaagcccatttatttcctctaattactggactaccgcctgaaagcaaagattaattaaataacttcatcattcatagcttg |
184 |
Q |
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| T |
16610051 |
aagatgcagcaacttagttgaagcccatttatttcgtttaattactaggctaccgcctgaaagcaaag-taagttaattaactttaacattcacagcttc |
16609953 |
T |
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| Q |
185 |
aaatttccaatgtgaaatgtaatataagtttgaatcacatggcta |
229 |
Q |
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| T |
16609952 |
taattttcaaagtggaatgtaatataagtttgaatcacatggcta |
16609908 |
T |
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