View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8260A_low_422 (Length: 229)
Name: NF8260A_low_422
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_422 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 32351102 - 32350879
Alignment:
| Q |
10 |
tatatccgaaccattataaatagcaatttggtccggattaaaatgcaaagggttcatttcaattattatgagttttgaaaagaatccggttcaatttggt |
109 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32351102 |
tatatccgaaccattatgaatagcaatttggtccggattaaaatgcaaagggttcatttcaattattatgagttttgaaaagaatccggttcaatttggt |
32351003 |
T |
|
| Q |
110 |
ttggttttcctcgtgaaccaaaccatgtcca------caaggccctccaatccattctcataaattttcaactaggcccgagctcgatatgtgttacctt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32351002 |
ttggttttcctcgtgaaccaaaccatgtccaccctagcaaggtcctccaatccattctcataaattttcaactaggcccgagctcgata--tgttacctt |
32350905 |
T |
|
| Q |
204 |
gtcaaacaaaaaacaatgtgttcttg |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32350904 |
gtcaaacaaaaaacaatgtgttcttg |
32350879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University