View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8260A_low_425 (Length: 229)
Name: NF8260A_low_425
Description: NF8260A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8260A_low_425 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 9037247 - 9037032
Alignment:
| Q |
6 |
ataatttacatatttataggcgtgggtgtagaataccagagtttatagctccttatttaaacaccgccattagaaccaacatgccaattgccaaatatgt |
105 |
Q |
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| T |
9037247 |
ataatttacatatttataggcgtgggtgtagaataccagagtttatagctcattatttaaacaccaccattagaaccaacatgccaa-------atatat |
9037155 |
T |
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| Q |
106 |
attttgtaaatacacaacatggaatttgaaattacatttttaaaaaaggacagactaatgttgggtgagtacgtagattttaaataaaacttctaaggac |
205 |
Q |
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| T |
9037154 |
tttttgtaaatacacaacatggaatttgaaattacatttttaaaaaaggacaaactaatgttgggtgagtacgtagaatctaaataaaatttctaaggac |
9037055 |
T |
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| Q |
206 |
aaactaatgttgggtgagtactt |
228 |
Q |
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| T |
9037054 |
aaactaatgttgggtgagtactt |
9037032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 9037060 - 9037011
Alignment:
| Q |
151 |
aaggacagactaatgttgggtgagtacgtagattttaaataaaacttcta |
200 |
Q |
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| T |
9037060 |
aaggacaaactaatgttgggtgagtacttagaatctaaataaaacttcta |
9037011 |
T |
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